RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 PXMP2Q9NR77 195 aa24.04■■□□□ 1.44
COL6A1-203ENST00000466285 MAD2L2Q9UI95 211 aa24.04■■□□□ 1.44
COL6A1-203ENST00000466285 TCF20Q9UGU0 1960 aaKnown RBP24.03■■□□□ 1.44
COL6A1-203ENST00000466285 RGS20O76081 388 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 CFBP00751 764 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 ZNF286BP0CG31 522 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 HIC1Q14526 733 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 TJAP1Q5JTD0 557 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 TTC22Q5TAA0 569 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 RPUSD2Q8IZ73 545 aaKnown RBP24.03■■□□□ 1.44
COL6A1-203ENST00000466285 NSUN6Q8TEA1 469 aaKnown RBP24.03■■□□□ 1.44
COL6A1-203ENST00000466285 MTMR8Q96EF0 704 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 PCDHA11Q9Y5I1 949 aa24.03■■□□□ 1.44
COL6A1-203ENST00000466285 HIP1O00291 1037 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 GH1P01241 217 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 HOXA13P31271 388 aaPredicted RBP24.02■■□□□ 1.44
COL6A1-203ENST00000466285 HSD17B4P51659 736 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 IFIT1BQ5T764 474 aaKnown RBP24.02■■□□□ 1.44
COL6A1-203ENST00000466285 KRT40Q6A162 431 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 STOX1Q6ZVD7 989 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 GPKOWQ92917 476 aaPredicted RBP eCLIP24.02■■□□□ 1.44
COL6A1-203ENST00000466285 MPHOSPH6Q99547 160 aaKnown RBP24.02■■□□□ 1.44
COL6A1-203ENST00000466285 UBAC1Q9BSL1 405 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 KRT23Q9C075 422 aa24.02■■□□□ 1.44
COL6A1-203ENST00000466285 DDX41Q9UJV9 622 aaKnown RBP24.02■■□□□ 1.44
COL6A1-203ENST00000466285 PITPNM1O00562 1244 aa24.01■■□□□ 1.43
COL6A1-203ENST00000466285 IRX6P78412 446 aaPredicted RBP24.01■■□□□ 1.43
COL6A1-203ENST00000466285 COL9A3Q14050 684 aaPredicted RBP24.01■■□□□ 1.43
COL6A1-203ENST00000466285 PTGISQ16647 500 aa24.01■■□□□ 1.43
COL6A1-203ENST00000466285 CCDC178Q5BJE1 867 aa24.01■■□□□ 1.43
COL6A1-203ENST00000466285 MICALL1Q8N3F8 863 aa24.01■■□□□ 1.43
COL6A1-203ENST00000466285 MRPL11Q9Y3B7 192 aaKnown RBP24.01■■□□□ 1.43
COL6A1-203ENST00000466285 KLRF2D3W0D1 207 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 PFKMP08237 780 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 CYP21A2P08686 494 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 GHRHRQ02643 423 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 PTPN11Q06124 597 aaPredicted RBP24■■□□□ 1.43
COL6A1-203ENST00000466285 STXBP2Q15833 593 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 BRDTQ58F21 947 aaPredicted RBP24■■□□□ 1.43
COL6A1-203ENST00000466285 ARHGEF16Q5VV41 709 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 HOMER1Q86YM7 354 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 THEGQ9P2T0 379 aa24■■□□□ 1.43
COL6A1-203ENST00000466285 PALM3A6NDB9 673 aaPredicted RBP23.99■■□□□ 1.43
COL6A1-203ENST00000466285 CYTH3O43739 400 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 KPNA6O60684 536 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 NR3C2P08235 984 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 ZNF200P98182 395 aaPredicted RBP23.99■■□□□ 1.43
COL6A1-203ENST00000466285 SESTD1Q86VW0 696 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 MCF2L2Q86YR7 1114 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 PIGSQ96S52 555 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 PDCD2LQ9BRP1 358 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 BCAS3Q9H6U6 928 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 CNNM2Q9H8M5 875 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 HDAC6Q9UBN7 1215 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 CTNNA3Q9UI47 895 aa23.99■■□□□ 1.43
COL6A1-203ENST00000466285 LCHNA4D1U4 455 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 DEFB103AP81534 67 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 GRM4Q14833 912 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 TRAF7Q6Q0C0 670 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 IWS1Q96ST2 819 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 ALG1Q9BT22 464 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 AMNQ9BXJ7 453 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 FTOQ9C0B1 505 aaKnown RBP eCLIP23.98■■□□□ 1.43
COL6A1-203ENST00000466285 GTF2IRD1Q9UHL9 959 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 NOD1Q9Y239 953 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 MRVI1Q9Y6F6 885 aa23.98■■□□□ 1.43
COL6A1-203ENST00000466285 B4DLN1 442 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 ZBTB5O15062 677 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 NBNO60934 754 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 F2P00734 622 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 MYCLP12524 364 aaPredicted RBP23.97■■□□□ 1.43
COL6A1-203ENST00000466285 RFC2P35250 354 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 PSEN2P49810 448 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 NT5C2P49902 561 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 MRPL12P52815 198 aaKnown RBP23.97■■□□□ 1.43
COL6A1-203ENST00000466285 ANTXR2P58335 489 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 SP2Q02086 613 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 TFF2Q03403 129 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 TAP1Q03518 808 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 MBTPS1Q14703 1052 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 MICAL3Q7RTP6 2002 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 HERC6Q8IVU3 1022 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 TELO2Q9Y4R8 837 aa23.97■■□□□ 1.43
COL6A1-203ENST00000466285 HAS3O00219 553 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 CHMLP26374 656 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 BFSP2Q13515 415 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 PGM5Q15124 567 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 TRIM71Q2Q1W2 868 aaKnown RBP23.96■■□□□ 1.43
COL6A1-203ENST00000466285 TMEM67Q5HYA8 995 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 RETREG2Q8NC44 543 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 EMID1Q96A84 441 aaPredicted RBP23.96■■□□□ 1.43
COL6A1-203ENST00000466285 NECAB3Q96P71 396 aaPredicted RBP23.96■■□□□ 1.43
COL6A1-203ENST00000466285 ASB2Q96Q27 587 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 SLC9A7Q96T83 725 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 PCDHA1Q9Y5I3 950 aa23.96■■□□□ 1.43
COL6A1-203ENST00000466285 EIF3JO75822 258 aaKnown RBP23.95■■□□□ 1.42
COL6A1-203ENST00000466285 UBA1P22314 1058 aaKnown RBP23.95■■□□□ 1.42
COL6A1-203ENST00000466285 WDR5P61964 334 aaKnown RBP23.95■■□□□ 1.42
COL6A1-203ENST00000466285 MFSD10Q14728 455 aa23.95■■□□□ 1.42
COL6A1-203ENST00000466285 HSDL1Q3SXM5 330 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms