RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 SLC1A4P43007 532 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 OAZ1P54368 228 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 TRAF1Q13077 416 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 IKQ13123 557 aaPredicted RBP13.45□□□□□ -0.26
USP54-209ENST00000464635 GNL2Q13823 731 aaKnown RBP13.45□□□□□ -0.26
USP54-209ENST00000464635 TRIM60Q495X7 471 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 PPP1R18Q6NYC8 613 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 SLC39A5Q6ZMH5 540 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 STAG2Q8N3U4 1231 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 RRP36Q96EU6 259 aaKnown RBP13.45□□□□□ -0.26
USP54-209ENST00000464635 AIFM3Q96NN9 605 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 ZMYND12Q9H0C1 365 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 XPNPEP3Q9NQH7 507 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 DDX19AQ9NUU7 478 aaKnown RBP13.45□□□□□ -0.26
USP54-209ENST00000464635 TFIP11Q9UBB9 837 aaKnown RBP13.45□□□□□ -0.26
USP54-209ENST00000464635 ATP11BQ9Y2G3 1177 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 SYNGAP1Q96PV0 1343 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 FSD2A1L4K1 749 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 KIF28PB7ZC32 967 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 ADCY6O43306 1168 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CYTH3O43739 400 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 GNA11P29992 359 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 IRX5P78411 483 aaPredicted RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 GUCY1B3Q02153 619 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CNTN2Q02246 1040 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 ORC2Q13416 577 aaPredicted RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 SNX17Q15036 470 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CCDC96Q2M329 555 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CCDC183Q5T5S1 534 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 MCTP2Q6DN12 878 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 TTBK2Q6IQ55 1244 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CCDC174Q6PII3 467 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 MAMDC4Q6UXC1 1216 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 BTNL9Q6UXG8 535 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 FAM160B2Q86V87 743 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 ELOA2Q8IYF1 753 aaPredicted RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 ANKRD35Q8N283 1001 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CHST13Q8NET6 341 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 BICD2Q8TD16 824 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 TNFRSF25Q93038 417 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 UBE2OQ9C0C9 1292 aaKnown RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 RNF146Q9NTX7 359 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 ZHX1Q9UKY1 873 aaPredicted RBP13.44□□□□□ -0.26
USP54-209ENST00000464635 PRR12Q9ULL5 1215 aa13.44□□□□□ -0.26
USP54-209ENST00000464635 SYNRGQ9UMZ2 1314 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 FAM237AA0A1B0GTK4 181 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 MYADML2A6NDP7 307 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 BTBD18B2RXH4 712 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 M0R2N6 131 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 SPTLC2O15270 562 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 ADAMTS4O75173 837 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 GADD45BO75293 160 aaPredicted RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 AKR1A1P14550 325 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 SLC16A2P36021 539 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 NPY5RQ15761 445 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 MUM1L1Q5H9M0 696 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 L1TD1Q5T7N2 865 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 FAM173BQ6P4H8 233 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 ZNF467Q7Z7K2 595 aaPredicted RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 TDHQ8IZJ6 230 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 CCDC82Q8N4S0 544 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 MSL3Q8N5Y2 521 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 ZNF579Q8NAF0 562 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 CHURC1Q8WUH1 139 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 ACAD9Q9H845 621 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 GDPD2Q9HCC8 539 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 A1CFQ9NQ94 594 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 SEC63Q9UGP8 760 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 FBXO40Q9UH90 709 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 NOL7Q9UMY1 257 aaKnown RBP13.43□□□□□ -0.26
USP54-209ENST00000464635 PCDHA4Q9UN74 947 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 PHF24Q9UPV7 400 aa13.43□□□□□ -0.26
USP54-209ENST00000464635 BAZ2BQ9UIF8 2168 aaKnown RBP13.42□□□□□ -0.26
USP54-209ENST00000464635 ASTN1O14525 1302 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 FRMPD2Q68DX3 1309 aaPredicted RBP13.42□□□□□ -0.26
USP54-209ENST00000464635 PNMA6FA0A0J9YX94 578 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 SOWAHBA6NEL2 793 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 CTAGE5O15320 804 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 FDX1P10109 184 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 ALAS1P13196 640 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 CMA1P23946 247 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 NLRP5P59047 1200 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 STK38Q15208 465 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 PTPAQ15257 358 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 ZSCAN23Q3MJ62 389 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 CAVIN1Q6NZI2 390 aaKnown RBP13.42□□□□□ -0.26
USP54-209ENST00000464635 ARMCX2Q7L311 632 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 SH3RF1Q7Z6J0 888 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 CMTR1Q8N1G2 835 aaKnown RBP13.42□□□□□ -0.26
USP54-209ENST00000464635 FAM133AQ8N9E0 248 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 CHAMP1Q96JM3 812 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 PGBD1Q96JS3 809 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 KATNBL1Q9H079 304 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 PRDM5Q9NQX1 630 aaPredicted RBP13.42□□□□□ -0.26
USP54-209ENST00000464635 PDLIM7Q9NR12 457 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 TMEM63CQ9P1W3 806 aa13.42□□□□□ -0.26
USP54-209ENST00000464635 A0A1W2PQ45 241 aaPredicted RBP13.41□□□□□ -0.26
USP54-209ENST00000464635 A0A1W2PQY0 241 aa13.41□□□□□ -0.26
USP54-209ENST00000464635 STXBP3O00186 592 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms