RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CDC37Q16543 378 aaPredicted RBP16.8■□□□□ 0.28
LDLR-202ENST00000455727 WDR59Q6PJI9 974 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 RABGGTAQ92696 567 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 GMCL1Q96IK5 515 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 ZNF446Q9NWS9 450 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 CDC23Q9UJX2 597 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 CTAGE9A4FU28 777 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 RASSF10A6NK89 507 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 MARCH6O60337 910 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 MSL1Q68DK7 614 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 ZNF772Q68DY9 489 aaPredicted RBP16.79■□□□□ 0.28
LDLR-202ENST00000455727 DYMQ7RTS9 669 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 KCNK18Q7Z418 384 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 C7orf43Q8WVR3 580 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 HPS3Q969F9 1004 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 SLF1Q9BQI6 1058 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 KCNMB3Q9NPA1 279 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 SYNPO2Q9UMS6 1093 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 TRIM21P19474 475 aaKnown RBP16.79■□□□□ 0.28
LDLR-202ENST00000455727 CDK17Q00537 523 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 ICA1Q05084 483 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 FKBP15Q5T1M5 1219 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 CC2D2BQ6DHV5 1058 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 CRYGNQ8WXF5 182 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 DNAJC19Q96DA6 116 aa16.79■□□□□ 0.28
LDLR-202ENST00000455727 FAM196BA6NMK8 535 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L15C9J2P7 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L13C9JLJ4 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L11C9JVI0 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L18D6R9N7 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L22D6RA61 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L17D6RBQ6 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L19D6RCP7 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L20D6RJB6 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 F5H6K3 240 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 KLRC3Q07444 240 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L24Q0WX57 530 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 BMS1Q14692 1282 aaKnown RBP16.78■□□□□ 0.28
LDLR-202ENST00000455727 ECM1Q16610 540 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 ABCB5Q2M3G0 1257 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 USP17L6PQ6QN14 398 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 SRGAP1Q7Z6B7 1085 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 SLFN12Q8IYM2 578 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 CCDC170Q8IYT3 715 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 CEP112Q8N8E3 955 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 GOLGA1Q92805 767 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 AMNQ9BXJ7 453 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 ANO3Q9BYT9 981 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 HAUS4Q9H6D7 363 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 ZNHIT6Q9NWK9 470 aaKnown RBP16.78■□□□□ 0.28
LDLR-202ENST00000455727 REXO2Q9Y3B8 237 aaKnown RBP16.78■□□□□ 0.28
LDLR-202ENST00000455727 MEIS2O14770 477 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 KRT83P78385 493 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 VWA3BQ502W6 1294 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 SLC35F6Q8N357 371 aa16.78■□□□□ 0.28
LDLR-202ENST00000455727 BMP2KQ9NSY1 1161 aaPredicted RBP16.78■□□□□ 0.28
LDLR-202ENST00000455727 IDEP14735 1019 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 MMP14P50281 582 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 KIF4BQ2VIQ3 1234 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 KRT222Q8N1A0 295 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 SUPT20HQ8NEM7 779 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 PKNOX2Q96KN3 472 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 NAPGQ99747 312 aaPredicted RBP16.77■□□□□ 0.28
LDLR-202ENST00000455727 AGPAT5Q9NUQ2 364 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 PSME4Q14997 1843 aa16.77■□□□□ 0.28
LDLR-202ENST00000455727 TBX3O15119 743 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 ZRANB2O95218 330 aaKnown RBP eCLIP16.76■□□□□ 0.27
LDLR-202ENST00000455727 CYLC1P35663 651 aaPredicted RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 MAN2A1Q16706 1144 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 SHROOM1Q2M3G4 852 aaPredicted RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 BTNL9Q6UXG8 535 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 CCDC84Q86UT8 332 aaPredicted RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 TEX2Q8IWB9 1127 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 EEF2KMTQ96G04 330 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 TNS1Q9HBL0 1735 aaKnown RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 ATP8B1O43520 1251 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 ABL1P00519 1130 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 FOSP01100 380 aaPredicted RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 HNRNPH3P31942 346 aaKnown RBP16.76■□□□□ 0.27
LDLR-202ENST00000455727 AOC3Q16853 763 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 TMCO3Q6UWJ1 677 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 TSG101Q99816 390 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 NDST4Q9H3R1 872 aa16.76■□□□□ 0.27
LDLR-202ENST00000455727 EIF3CLB5ME19 914 aaKnown RBP16.75■□□□□ 0.27
LDLR-202ENST00000455727 RAD21O60216 631 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 NDUFB10O96000 172 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 LRRC55Q6ZSA7 311 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 MYOCDQ8IZQ8 938 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 EIF3CQ99613 913 aaKnown RBP16.75■□□□□ 0.27
LDLR-202ENST00000455727 TDRD3Q9H7E2 651 aaKnown RBP16.75■□□□□ 0.27
LDLR-202ENST00000455727 CHMP4BP1P59074 171 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 ARHGAP4P98171 946 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 COASYQ13057 564 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 Q4G0T1 1027 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 RBM26Q5T8P6 1007 aaKnown RBP16.75■□□□□ 0.27
LDLR-202ENST00000455727 FBXO11Q86XK2 927 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 PCMTD1Q96MG8 357 aaPredicted RBP16.75■□□□□ 0.27
LDLR-202ENST00000455727 PANK4Q9NVE7 773 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 SIK3Q9Y2K2 1263 aa16.75■□□□□ 0.27
LDLR-202ENST00000455727 STK24Q9Y6E0 443 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms