RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 FAM204AQ9H8W3 233 aa15.05■□□□□ 0
HERPUD1-204ENST00000439977 POLD4Q9HCU8 107 aa15.05■□□□□ 0
HERPUD1-204ENST00000439977 DDX4Q9NQI0 724 aaKnown RBP15.05■□□□□ 0
HERPUD1-204ENST00000439977 LCMT1Q9UIC8 334 aa15.05■□□□□ 0
HERPUD1-204ENST00000439977 SIK3Q9Y2K2 1263 aa15.05■□□□□ 0
HERPUD1-204ENST00000439977 FAM196BA6NMK8 535 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 IRX5P78411 483 aaPredicted RBP15.05■□□□□ -0
HERPUD1-204ENST00000439977 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
HERPUD1-204ENST00000439977 KCTD19Q17RG1 926 aaPredicted RBP15.05■□□□□ -0
HERPUD1-204ENST00000439977 TMEM266Q2M3C6 531 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 SHROOM1Q2M3G4 852 aaPredicted RBP15.05■□□□□ -0
HERPUD1-204ENST00000439977 RIOX1Q9H6W3 641 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 LRRC4BQ9NT99 713 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 PLAGL2Q9UPG8 496 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 DAGLAQ9Y4D2 1042 aa15.05■□□□□ -0
HERPUD1-204ENST00000439977 RASSF7Q02833 373 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 TDRD12Q587J7 1177 aaKnown RBP15.04■□□□□ -0
HERPUD1-204ENST00000439977 UNC13DQ70J99 1090 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 CACNA2D4Q7Z3S7 1137 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 ADGRF4Q8IZF3 695 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 EHBP1Q8NDI1 1231 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 MAGEF1Q9HAY2 307 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L15C9J2P7 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L13C9JLJ4 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L11C9JVI0 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L18D6R9N7 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L22D6RA61 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L17D6RBQ6 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L19D6RCP7 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L20D6RJB6 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 TRAF5O00463 557 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 RNF40O75150 1001 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L24Q0WX57 530 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L6PQ6QN14 398 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 RAD54LQ92698 747 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 JMJD4Q9H9V9 463 aa15.04■□□□□ -0
HERPUD1-204ENST00000439977 USP17L10C9JJH3 530 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 ANKRD65E5RJM6 399 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 E9PMD0 336 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 TUBB4BP68371 445 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 TBC1D16Q8TBP0 767 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 LRRC1Q9BTT6 524 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 DDX25Q9UHL0 483 aaKnown RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 DMGDHQ9UI17 866 aaKnown RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 FAM170AA1A519 330 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 SYF2O95926 243 aaKnown RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 RNASE9P60153 205 aaKnown RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 SNAP25P60880 206 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 CREG2Q8IUH2 290 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 LAMB1P07942 1786 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 WNK3Q9BYP7 1800 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 A0A0U1RQG5 324 aaPredicted RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 USO1O60763 962 aaKnown RBP15.03■□□□□ -0
HERPUD1-204ENST00000439977 GGCXP38435 758 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 MAGEA1P43355 309 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 MAN2A1Q16706 1144 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 DOK7Q18PE1 504 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 HAS1Q92839 578 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 MS4A14Q96JA4 679 aa15.03■□□□□ -0
HERPUD1-204ENST00000439977 COL5A3P25940 1745 aaPredicted RBP15.02■□□□□ -0
HERPUD1-204ENST00000439977 TACC1O75410 805 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 SERPINB2P05120 415 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 ACTN2P35609 894 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 SLC1A4P43007 532 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 CACNB3P54284 484 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 CCDC40Q4G0X9 1142 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 LRRC55Q6ZSA7 311 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 DNAAF5Q86Y56 855 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 SELENOOQ9BVL4 669 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 RABEP2Q9H5N1 569 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 SH2D4AQ9H788 454 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 HPCAL4Q9UM19 191 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 SNX12Q9UMY4 172 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 PCDHA12Q9UN75 941 aa15.02■□□□□ -0
HERPUD1-204ENST00000439977 TNRC6CQ9HCJ0 1690 aaKnown RBP15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 IL1R1P14778 569 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 PLCG2P16885 1265 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 STAT3P40763 770 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 FXR2P51116 673 aaKnown RBP eCLIP15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 CKAP4Q07065 602 aaKnown RBP15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 KCNMA1Q12791 1236 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 PTPROQ16827 1216 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 LEKR1Q6ZMV7 388 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 KIAA1024Q9UPX6 916 aa15.02□□□□□ -0.01
HERPUD1-204ENST00000439977 TRIM66O15016 1216 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 TAL1P17542 331 aaPredicted RBP15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 ATP2B4P23634 1241 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 COASYQ13057 564 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 GUF1Q8N442 669 aaKnown RBP15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 FAM71BQ8TC56 605 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 MTMR8Q96EF0 704 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 PURBQ96QR8 312 aaKnown RBP15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 JRKLQ9Y4A0 524 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 CASZ1Q86V15 1759 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 A0A1W2PQJ5 194 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 CCNI2Q6ZMN8 369 aaPredicted RBP15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 TRIM58Q8NG06 486 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 BAP1Q92560 729 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 RAB34Q9BZG1 259 aa15.01□□□□□ -0.01
HERPUD1-204ENST00000439977 PANK4Q9NVE7 773 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms