RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PPM1EQ8WY54 764 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 GAS2L1Q99501 681 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-208ENST00000437607 LY9Q9HBG7 655 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 VTA1Q9NP79 307 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 RBM47A0AV96 593 aaKnown RBP14.06□□□□□ -0.16
PTPRF-208ENST00000437607 NFIBO00712 420 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 LIFRP42702 1097 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 ALDH5A1P51649 535 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-208ENST00000437607 APOBRQ0VD83 1088 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 RAB30Q15771 203 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 CCDC96Q2M329 555 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 DUSP28Q4G0W2 176 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 SYNE3Q6ZMZ3 975 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 TMTC2Q8N394 836 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 ENAHQ8N8S7 591 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-208ENST00000437607 SCLYQ96I15 445 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 TMX3Q96JJ7 454 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 TMEM47Q9BQJ4 181 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 SEZ6LQ9BYH1 1024 aa14.06□□□□□ -0.16
PTPRF-208ENST00000437607 ZEB2O60315 1214 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 RABGGTBP53611 331 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 SYDE2Q5VT97 1194 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 SLC30A10Q6XR72 485 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 SGMS1Q86VZ5 419 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 MICU3Q86XE3 530 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 CLEC4DQ8WXI8 215 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 LARP6Q9BRS8 491 aaKnown RBP14.05□□□□□ -0.16
PTPRF-208ENST00000437607 KAT14Q9H8E8 782 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 GPCPD1Q9NPB8 672 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 GPHNQ9NQX3 736 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-208ENST00000437607 TCP11L1Q9NUJ3 509 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 TRMT13Q9NUP7 481 aaKnown RBP14.05□□□□□ -0.16
PTPRF-208ENST00000437607 MSRAQ9UJ68 235 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 TPCN1Q9ULQ1 816 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 SLC12A7Q9Y666 1083 aa14.05□□□□□ -0.16
PTPRF-208ENST00000437607 FRMPD2Q68DX3 1309 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-208ENST00000437607 DOCK5Q9H7D0 1870 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 GOLGA8AA7E2F4 631 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 LARGE1O95461 756 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 CYP2C9P11712 490 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 MYOGP15173 224 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 PURAQ00577 322 aaKnown RBP14.04□□□□□ -0.16
PTPRF-208ENST00000437607 STK3Q13188 491 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 SEC23AQ15436 765 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 CCDC85BQ15834 202 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-208ENST00000437607 APOA5Q6Q788 366 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 CATIPQ7Z7H3 387 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 IGDCC4Q8TDY8 1250 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 WDR11Q9BZH6 1224 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 SLKQ9H2G2 1235 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-208ENST00000437607 BRWD1Q9NSI6 2320 aa14.04□□□□□ -0.16
PTPRF-208ENST00000437607 LOC102724159A0A0B4J2E5 919 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 TNFRSF10AO00220 468 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 ZBTB43O43298 467 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 DDAH1O94760 285 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 PDHBP11177 359 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 TOP1P11387 765 aaKnown RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 METAP2P50579 478 aaKnown RBP eCLIP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 RCAN1P53805 252 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 TTLL4Q14679 1199 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 PWP2Q15269 919 aaKnown RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 DGKHQ86XP1 1220 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 CCDC83Q8IWF9 413 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 ZNF654Q8IZM8 581 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 PPP1R13LQ8WUF5 828 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 ATXN2LQ8WWM7 1075 aaKnown RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 ZNF274Q96GC6 653 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 MTIF3Q9H2K0 278 aaKnown RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 SLC28A3Q9HAS3 691 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 THEGQ9P2T0 379 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 ADD3Q9UEY8 706 aaKnown RBP14.03□□□□□ -0.16
PTPRF-208ENST00000437607 SIP14410 1827 aa14.03□□□□□ -0.16
PTPRF-208ENST00000437607 BAZ2BQ9UIF8 2168 aaKnown RBP14.02□□□□□ -0.16
PTPRF-208ENST00000437607 MICAL3Q7RTP6 2002 aa14.02□□□□□ -0.16
PTPRF-208ENST00000437607 NID2Q14112 1375 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 PTPDC1A2A3K4 754 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 MYL3P08590 195 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 CALM1P0DP23 149 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 CALM2P0DP24 149 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 CALM3P0DP25 149 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 IGFBP4P22692 258 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 EDNRBP24530 442 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 ME3Q16798 604 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 RPUSD2Q8IZ73 545 aaKnown RBP14.02□□□□□ -0.17
PTPRF-208ENST00000437607 OR6J1Q8NGC5 347 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 COPS5Q92905 334 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 GTF3C6Q969F1 213 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 ASB2Q96Q27 587 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 POLR3EQ9NVU0 708 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 PCDHA11Q9Y5I1 949 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 SLC4A7Q9Y6M7 1214 aa14.02□□□□□ -0.17
PTPRF-208ENST00000437607 CPLX1O14810 134 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 DHX16O60231 1041 aaKnown RBP14.01□□□□□ -0.17
PTPRF-208ENST00000437607 PFKFB2O60825 505 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 SNHG28P0DPA3 235 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 CALML3P27482 149 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 PDIA3P30101 505 aaKnown RBP14.01□□□□□ -0.17
PTPRF-208ENST00000437607 EVCP57679 992 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 ZNF543Q08ER8 600 aa14.01□□□□□ -0.17
PTPRF-208ENST00000437607 CUL4AQ13619 759 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms