RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 EIF2AK2P19525 551 aaKnown RBP14.25□□□□□ -0.13
USP40-205ENST00000430158 UBXN2AP68543 259 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 MRPS9P82933 396 aaKnown RBP14.25□□□□□ -0.13
USP40-205ENST00000430158 ACVR2BQ13705 512 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 CCDC148Q8NFR7 591 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 CCDC12Q8WUD4 166 aaPredicted RBP14.25□□□□□ -0.13
USP40-205ENST00000430158 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP40-205ENST00000430158 ABHD16BQ9H3Z7 469 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 PDGFCQ9NRA1 345 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 PCDHA6Q9UN73 950 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 KCNJ14Q9UNX9 436 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 COLQQ9Y215 455 aaPredicted RBP14.25□□□□□ -0.13
USP40-205ENST00000430158 PCDHA8Q9Y5H6 950 aa14.25□□□□□ -0.13
USP40-205ENST00000430158 K7ELQ4 463 aaPredicted RBP14.24□□□□□ -0.13
USP40-205ENST00000430158 FOSP01100 380 aaPredicted RBP14.24□□□□□ -0.13
USP40-205ENST00000430158 GNA11P29992 359 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 HMGN5P82970 282 aaKnown RBP14.24□□□□□ -0.13
USP40-205ENST00000430158 TMEM63BQ5T3F8 832 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 ARHGEF16Q5VV41 709 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 GALNT17Q6IS24 598 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 RASGRP4Q8TDF6 673 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 WASF1Q92558 559 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 TNFRSF25Q93038 417 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 CRISPLD2Q9H0B8 497 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 C6orf50Q9HD87 102 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 VTA1Q9NP79 307 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 BIN2Q9UBW5 565 aaPredicted RBP14.24□□□□□ -0.13
USP40-205ENST00000430158 PCDHA4Q9UN74 947 aa14.24□□□□□ -0.13
USP40-205ENST00000430158 TTLL13PA6NNM8 815 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 SEPT4O43236 478 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 EIF3JO75822 258 aaKnown RBP14.23□□□□□ -0.13
USP40-205ENST00000430158 GJB1P08034 283 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 SREBF1P36956 1147 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 AP3B2Q13367 1082 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 JAKMIP3Q5VZ66 844 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 PCNX4Q63HM2 1172 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 KRT40Q6A162 431 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 CCDC62Q6P9F0 684 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 FBXO16Q8IX29 292 aaPredicted RBP14.23□□□□□ -0.13
USP40-205ENST00000430158 BLIDQ8IZY5 108 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 OXER1Q8TDS5 423 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 PGBD1Q96JS3 809 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 ANO3Q9BYT9 981 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 RNF208Q9H0X6 261 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 HMX1Q9NP08 348 aaPredicted RBP14.23□□□□□ -0.13
USP40-205ENST00000430158 CNPY2Q9Y2B0 182 aa14.23□□□□□ -0.13
USP40-205ENST00000430158 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 ARIH2O95376 493 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 MYCP01106 439 aaPredicted RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 NLRP5P59047 1200 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 NKX3-2P78367 333 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 PDE4DQ08499 809 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 SEMA3FQ13275 785 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 STXBP2Q15833 593 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 CCDC144BQ3MJ40 725 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 XRRA1Q6P2D8 792 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 EEPD1Q7L9B9 569 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 REXO1Q8N1G1 1221 aaKnown RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 FBXO18Q8NFZ0 1043 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 INTS4Q96HW7 963 aaKnown RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 INPP4AQ96PE3 977 aaPredicted RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 DDX20Q9UHI6 824 aaKnown RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 GNEQ9Y223 722 aaKnown RBP14.22□□□□□ -0.13
USP40-205ENST00000430158 UBIAD1Q9Y5Z9 338 aa14.22□□□□□ -0.13
USP40-205ENST00000430158 CTAGE5O15320 804 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 SGPL1O95470 568 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 MMP1P03956 469 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 CYP3A4P08684 503 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 SMPD1P17405 629 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 ITGB5P18084 799 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 PTGS1P23219 599 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 ICAM3P32942 547 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 ADCYAP1R1P41586 468 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 GJA8P48165 433 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 EARS2Q5JPH6 523 aaKnown RBP14.21□□□□□ -0.13
USP40-205ENST00000430158 MCTP2Q6DN12 878 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 IQSEC1Q6DN90 963 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 BICD2Q8TD16 824 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 LENG1Q96BZ8 264 aaPredicted RBP14.21□□□□□ -0.13
USP40-205ENST00000430158 ZFP91Q96JP5 570 aaPredicted RBP14.21□□□□□ -0.13
USP40-205ENST00000430158 ZHX1Q9UKY1 873 aaPredicted RBP14.21□□□□□ -0.13
USP40-205ENST00000430158 OGDHLQ9ULD0 1010 aa14.21□□□□□ -0.13
USP40-205ENST00000430158 DOCK5Q9H7D0 1870 aa14.21□□□□□ -0.14
USP40-205ENST00000430158 SPDYE3A6NKU9 549 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 B4DLN1 442 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 MYCLP12524 364 aaPredicted RBP14.2□□□□□ -0.14
USP40-205ENST00000430158 AKR1A1P14550 325 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 GJB2P29033 226 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 CCND2P30279 289 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 CIITAP33076 1130 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 ARHGAP4P98171 946 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 CYP2W1Q8TAV3 490 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 U2AF1L4Q8WU68 220 aaKnown RBP14.2□□□□□ -0.14
USP40-205ENST00000430158 DEFB118Q96PH6 123 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 UPF3AQ9H1J1 476 aaKnown RBP14.2□□□□□ -0.14
USP40-205ENST00000430158 FAM184BQ9ULE4 1060 aa14.2□□□□□ -0.14
USP40-205ENST00000430158 MKI67P46013 3256 aaKnown RBP14.19□□□□□ -0.14
USP40-205ENST00000430158 IGLV3-22A0A075B6J6 115 aa14.19□□□□□ -0.14
USP40-205ENST00000430158 FAM205CA6NFA0 338 aa14.19□□□□□ -0.14
USP40-205ENST00000430158 BTBD18B2RXH4 712 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms