RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PDCD2LQ9BRP1 358 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 RIOX1Q9H6W3 641 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 SLC4A7Q9Y6M7 1214 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 UNC80Q8N2C7 3258 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 ZBBXA8MT70 800 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 GCOM1H8Y6P7 765 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 POLR2MP0CAP2 368 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 ACTN1P12814 892 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 CASTP20810 708 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 TROAPQ12815 778 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 DGKDQ16760 1214 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 TMEM67Q5HYA8 995 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 KCNV1Q6PIU1 500 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 STOX1Q6ZVD7 989 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 CHST3Q7LGC8 479 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 CATIPQ7Z7H3 387 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 MB21D2Q8IYB1 491 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 PPTC7Q8NI37 304 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 VWCEQ96DN2 955 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 GAS2L1Q99501 681 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 KATNAL1Q9BW62 490 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 DDX41Q9UJV9 622 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 TAF6LQ9Y6J9 622 aa13.4□□□□□ -0.26
SQSTM1-203ENST00000422245 PNMA6FA0A0J9YX94 578 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 DDAH1O94760 285 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 ATP2A2P16615 1042 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 ANTXR2P58335 489 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 CHMP4BP1P59074 171 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 LAMC2Q13753 1193 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 PTGISQ16647 500 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 SLC35G1Q2M3R5 365 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 CAGE1Q8TC20 777 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 KAT2BQ92831 832 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 MAP4K1Q92918 833 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 PIGSQ96S52 555 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 MTA3Q9BTC8 594 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 COL25A1Q9BXS0 654 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 NKX2-4Q9H2Z4 354 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 SLC28A3Q9HAS3 691 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 SENP2Q9HC62 589 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 RBM8AQ9Y5S9 174 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 MYO9BQ13459 2157 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 SCN5AQ14524 2016 aa13.39□□□□□ -0.27
SQSTM1-203ENST00000422245 CYTH3O43739 400 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 F2P00734 622 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 IQCF3P0C7M6 154 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 MYCLP12524 364 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 HOXD8P13378 290 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 CCND2P30279 289 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 HOXA13P31271 388 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 PGM5Q15124 567 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 DEFB128Q7Z7B8 93 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 VSIG10LQ86VR7 867 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 DHX37Q8IY37 1157 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 CTCFLQ8NI51 663 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 AFAP1L1Q8TED9 768 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 PPP1R13LQ8WUF5 828 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 SLC9A7Q96T83 725 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 MAP3K14Q99558 947 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 PRDM12Q9H4Q4 367 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 YBX2Q9Y2T7 364 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 PCDHA11Q9Y5I1 949 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 FRMPD4Q14CM0 1322 aa13.38□□□□□ -0.27
SQSTM1-203ENST00000422245 BAZ2BQ9UIF8 2168 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 RGS20O76081 388 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 BAIAP3O94812 1187 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 ZNF286BP0CG31 522 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 UBA1P22314 1058 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 KIF5BP33176 963 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 PSEN2P49810 448 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 RBL2Q08999 1139 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 MFSD10Q14728 455 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 PPP2R2DQ66LE6 453 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 CASC1Q6TDU7 716 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 ZNF654Q8IZM8 581 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 C7orf31Q8N865 590 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 IL31RAQ8NI17 732 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 IGDCC4Q8TDY8 1250 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 CTAGE1Q96RT6 745 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 SPZ1Q9BXG8 430 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 GTF2IRD1Q9UHL9 959 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 MYH7BA7E2Y1 1941 aa13.37□□□□□ -0.27
SQSTM1-203ENST00000422245 STAM2O75886 525 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 PARNO95453 639 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 GGPS1O95749 300 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 TGFB3P10600 412 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 SELPP16109 830 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 RABGGTBP53611 331 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 GNPTABQ3T906 1256 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 CELF3Q5SZQ8 465 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 MYSM1Q5VVJ2 828 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 GDF6Q6KF10 455 aaPredicted RBP13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 FCHSD1Q86WN1 690 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 USP38Q8NB14 1042 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 PHOSPHO2Q8TCD6 241 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 SPATA33Q96N06 139 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 LZTS2Q9BRK4 669 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 FTOQ9C0B1 505 aaKnown RBP eCLIP13.36□□□□□ -0.278e-6■■■□□ 15.4
SQSTM1-203ENST00000422245 LY9Q9HBG7 655 aa13.36□□□□□ -0.27
SQSTM1-203ENST00000422245 CHD9Q3L8U1 2897 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms