RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MMP19Q99542 508 aa19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 MPHOSPH6Q99547 160 aaKnown RBP19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 PTPN18Q99952 460 aa19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 NUP62CLQ9H1M0 184 aa19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 GOLPH3LQ9H4A5 285 aa19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 PXMP2Q9NR77 195 aa19.36■□□□□ 0.69
CCDC28B-202ENST00000421922 FRMPD4Q14CM0 1322 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 B4DLN1 442 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 POTEB2H3BUK9 544 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 MYCLP12524 364 aaPredicted RBP19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 NDUFA8P51970 172 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 GRIN1Q05586 938 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 SPECC1Q5M775 1068 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 PCNX4Q63HM2 1172 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 POTEEQ6S8J3 1075 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 PLA2G4DQ86XP0 818 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 CCDC34Q96HJ3 373 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 AK8Q96MA6 479 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 MBOAT7Q96N66 472 aa19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 PYM1Q9BRP8 204 aaKnown RBP19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 ADD3Q9UEY8 706 aaKnown RBP19.35■□□□□ 0.69
CCDC28B-202ENST00000421922 TBX3O15119 743 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 NR1I2O75469 434 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FCER1AP12319 257 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 PGM5Q15124 567 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 CEP55Q53EZ4 464 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 XRRA1Q6P2D8 792 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 IFNL1Q8IU54 200 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 PDCD2LQ9BRP1 358 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 MORF4L1Q9UBU8 362 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 KCNH3Q9ULD8 1083 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 IVNS1ABPQ9Y6Y0 642 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 PLXNB2O15031 1838 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FAM155AB1AL88 458 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FAM86B1E9PN63 330 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 IGF2BP3O00425 579 aaKnown RBP eCLIP19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 LETM1O95202 739 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FAM86B2P0C5J1 330 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 UBA7P41226 1012 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 TECP42680 631 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FAM110CQ1W6H9 321 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 Q3C1V9 767 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 CYP4F22Q6NT55 531 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 DNERQ8NFT8 737 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 SYMPKQ92797 1274 aaKnown RBP19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 FAM20AQ96MK3 541 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 MTMR9Q96QG7 549 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 TNMDQ9H2S6 317 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 ZFYVE28Q9HCC9 887 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 TMEM63CQ9P1W3 806 aa19.34■□□□□ 0.69
CCDC28B-202ENST00000421922 EDIL3O43854 480 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 FXR2P51116 673 aaKnown RBP eCLIP19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 NOGQ13253 232 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 DEFB115Q30KQ5 88 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 FMR1NBQ8N0W7 255 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 MXRA8Q9BRK3 442 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 CLSTN2Q9H4D0 955 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 TTC12Q9H892 705 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 PRDM10Q9NQV6 1147 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 LRWD1Q9UFC0 647 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 CCDC39Q9UFE4 941 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 HOOK1Q9UJC3 728 aaKnown RBP19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 PCDHA12Q9UN75 941 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 LCTP09848 1927 aa19.33■□□□□ 0.68
CCDC28B-202ENST00000421922 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 NIPA1Q7RTP0 329 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 NLRX1Q86UT6 975 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 IL31RAQ8NI17 732 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 CDK5RAP3Q96JB5 506 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 SDF4Q9BRK5 362 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 KCNMB3Q9NPA1 279 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 TCEAL9Q9UHQ7 104 aa19.32■□□□□ 0.68
CCDC28B-202ENST00000421922 ZNFX1Q9P2E3 1918 aaKnown RBP19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 FAM237AA0A1B0GTK4 181 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 CTAGE5O15320 804 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 STAM2O75886 525 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 ZNF202O95125 648 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 NR3C2P08235 984 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 IL17AQ16552 155 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 ZSCAN23Q3MJ62 389 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 ETNPPLQ8TBG4 499 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 CALML4Q96GE6 196 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 EPSTI1Q96J88 318 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 CAPNS2Q96L46 248 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 IWS1Q96ST2 819 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 ZNF577Q9BSK1 485 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 PORCNQ9H237 461 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 EFCC1Q9HA90 598 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 CPA4Q9UI42 421 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 HPSEQ9Y251 543 aa19.31■□□□□ 0.68
CCDC28B-202ENST00000421922 IGLV3-22A0A075B6J6 115 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 RASSF10A6NK89 507 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 MSH4O15457 936 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 POLR2DO15514 142 aaKnown RBP19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 ALDH1A1P00352 501 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 MAPK4P31152 587 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 ALDH5A1P51649 535 aaPredicted RBP19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 PDE4DQ08499 809 aa19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 SNW1Q13573 536 aaKnown RBP19.3■□□□□ 0.68
CCDC28B-202ENST00000421922 MTMR1Q13613 665 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms