RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 NBPF5PQ86XG9 351 aaPredicted RBP10.86□□□□□ -0.67
CD44-206ENST00000415148 RNF10Q8N5U6 811 aaKnown RBP10.86□□□□□ -0.67
CD44-206ENST00000415148 AENQ8WTP8 325 aaKnown RBP10.86□□□□□ -0.67
CD44-206ENST00000415148 ALS2CR12Q96Q35 445 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 EFCC1Q9HA90 598 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 ARHGAP20Q9P2F6 1191 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 STX8Q9UNK0 236 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 SSU72P8A0A1W2PR75 194 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 NCK2O43639 380 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 RPS6KA4O75676 772 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 CLSTN1O94985 981 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 TNFRSF8P28908 595 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 KIF11P52732 1056 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 SEPT2Q15019 361 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 TMEM266Q2M3C6 531 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 GLE1Q53GS7 698 aaKnown RBP10.85□□□□□ -0.67
CD44-206ENST00000415148 PROM2Q8N271 834 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 TBCKQ8TEA7 893 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 TGFBRAP1Q8WUH2 860 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 ARL8AQ96BM9 186 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 BLOC1S4Q9NUP1 217 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 SALL4Q9UJQ4 1053 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 TSKSQ9UJT2 592 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 HYOU1Q9Y4L1 999 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 GRIN2DO15399 1336 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 SHOX2O60902 331 aaPredicted RBP10.85□□□□□ -0.67
CD44-206ENST00000415148 MOCS3O95396 460 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 PLCG2P16885 1265 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 CDK8P49336 464 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 IRAK1P51617 712 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 GRB10Q13322 594 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 SND1Q7KZF4 910 aaKnown RBP eCLIP10.85□□□□□ -0.67
CD44-206ENST00000415148 C2CD5Q86YS7 1000 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 REXO1Q8N1G1 1221 aaKnown RBP10.85□□□□□ -0.67
CD44-206ENST00000415148 LARP4BQ92615 738 aaKnown RBP10.85□□□□□ -0.67
CD44-206ENST00000415148 SYN2Q92777 582 aaPredicted RBP10.85□□□□□ -0.67
CD44-206ENST00000415148 EYA3Q99504 573 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 DEF6Q9H4E7 631 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 RIOX1Q9H6W3 641 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 SLC39A2Q9NP94 309 aa10.85□□□□□ -0.67
CD44-206ENST00000415148 MYMKA6NI61 221 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 A6NNZ2 444 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 EIF4A3P38919 411 aaKnown RBP10.84□□□□□ -0.67
CD44-206ENST00000415148 LIG3P49916 1009 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ATP2B2Q01814 1243 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 PPARDQ03181 441 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 TUBB8Q3ZCM7 444 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ICE2Q659A1 982 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 NFRKBQ6P4R8 1299 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 GBP6Q6ZN66 633 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ZNF804AQ7Z570 1209 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ANKRD13CQ8N6S4 541 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 SPATA4Q8NEY3 305 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 OSBPL9Q96SU4 736 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 TSG101Q99816 390 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 SAMM50Q9Y512 469 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 GOLGA6BA6NDN3 693 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 GOLGA8KD6RF30 607 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 RBAK-RBAKDNI3L0D1 243 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 KCNQ2O43526 872 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 AKR1B10O60218 316 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 GOLGA8HP0CJ92 632 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 PAFAH1B1P43034 410 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 MAGEA1P43355 309 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 EHHADHQ08426 723 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 CALCRLQ16602 461 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ASTE1Q2TB18 679 aaPredicted RBP10.84□□□□□ -0.67
CD44-206ENST00000415148 TTMPQ5BVD1 217 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 ALS2CLQ60I27 953 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 RAD54LQ92698 747 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 CDK5RAP3Q96JB5 506 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 PNMA5Q96PV4 448 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 RTFDC1Q9BY42 306 aaPredicted RBP10.84□□□□□ -0.67
CD44-206ENST00000415148 MTMR7Q9Y216 660 aa10.84□□□□□ -0.67
CD44-206ENST00000415148 GPR75-ASB3A0A0A6YYF3 556 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 GOLGA6CA6NDK9 693 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 ZSCAN5CA6NGD5 496 aaPredicted RBP10.83□□□□□ -0.68
CD44-206ENST00000415148 OPA1O60313 960 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 ZPR1O75312 459 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 GOLGA6DP0CG33 693 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 TXKP42681 527 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 EPHB4P54760 987 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 NNTQ13423 1086 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 EMBQ6PCB8 327 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 POTEDQ86YR6 584 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 MICALL1Q8N3F8 863 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SH2D3CQ8N5H7 860 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 FAM76AQ8TAV0 307 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 BAP1Q92560 729 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 FAM163AQ96GL9 167 aaPredicted RBP10.83□□□□□ -0.68
CD44-206ENST00000415148 SH3GL2Q99962 352 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 CPVLQ9H3G5 476 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 MMRN2Q9H8L6 949 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 GOLGA6AQ9NYA3 693 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 JAG2Q9Y219 1238 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SBF2Q86WG5 1849 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SNED1Q8TER0 1413 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 SLC26A4O43511 780 aa10.83□□□□□ -0.68
CD44-206ENST00000415148 EPB41P11171 864 aaKnown RBP10.83□□□□□ -0.68
CD44-206ENST00000415148 PDXDC1Q6P996 788 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms