RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CHGBP05060 677 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 S100A5P33763 92 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 CAPRIN1Q14444 709 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TMED2Q15363 201 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 RNF169Q8NCN4 708 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SLC38A10Q9HBR0 1119 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 OLFML3Q9NRN5 406 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MRGBPQ9NV56 204 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 POLKQ9UBT6 870 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ATP11BQ9Y2G3 1177 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SOX5P35711 763 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 PAPOLAP51003 745 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 CYP2J2P51589 502 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MYO1EQ12965 1108 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MORF4L2Q15014 288 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 DISC1Q9NRI5 854 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 KIF1BO60333 1816 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MT-ND3P03897 115 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 NCF2P19878 526 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 GRAMD1BQ3KR37 738 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 RARS2Q5T160 578 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 KCTD6Q8NC69 237 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 CHURC1Q8WUH1 139 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 RWDD2BP57060 319 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 LMBR1LQ6UX01 489 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 BRIP1Q9BX63 1249 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SFMBT1Q9UHJ3 866 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 THOC2Q8NI27 1593 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MYO1FO00160 1098 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 PGRMC1O00264 195 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SNX2O60749 519 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 POLGP54098 1239 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 KIF23Q02241 960 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SGO2Q562F6 1265 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ADALQ6DHV7 355 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 PPP2R2CQ9Y2T4 447 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TADA3O75528 432 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ARHGEF1Q92888 912 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 MMTAG2Q9BU76 263 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SNX25Q9H3E2 840 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 EXOC1LA0A1B0GW35 172 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 RPSAP08865 295 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 CHST3Q7LGC8 479 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 NME9Q86XW9 330 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 CNBD1Q8NA66 436 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TRPV6Q9H1D0 765 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 GGA1Q9UJY5 639 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 IGF1RP08069 1367 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 NUP160Q12769 1436 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GAP43P17677 238 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CCT5P48643 541 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GUCY2DQ02846 1103 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TFCP2Q12800 502 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CEP55Q53EZ4 464 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 FAM178BQ8IXR5 827 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 SMCR8Q8TEV9 937 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 SAP30BPQ9UHR5 308 aaKnown RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TCP11Q8WWU5 503 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 KPNA7A9QM74 516 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 WDR47O94967 919 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MYL1P05976 194 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 SLFN14P0C7P3 912 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GJC2Q5T442 439 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 ABI1Q8IZP0 508 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TEKT3Q9BXF9 490 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 SEPT3Q9UH03 358 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MAPK8IP1Q9UQF2 711 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TNNQ9UQP3 1299 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MRPL11Q9Y3B7 192 aaKnown RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CFAP43Q8NDM7 1665 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CHMLP26374 656 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 ST13P50502 369 aaKnown RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 USH1GQ495M9 461 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 C1orf228Q6PIY5 440 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TEKT4Q8WW24 435 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GCOM2Q9BZD3 368 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 DUOX2Q9NRD8 1548 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MYO1DO94832 1006 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GOLGA8FQ08AF8 430 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GOLGA8DPQ0D2H9 430 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CENPUQ71F23 418 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TCEANC2Q96MN5 208 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 UBXN8O00124 270 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 AARSP49588 968 aaKnown RBP eCLIP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 DEFA1P59665 94 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 DEFA3P59666 94 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MAEAQ7L5Y9 396 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 LUZP2Q86TE4 346 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 PCDHB4Q9Y5E5 795 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 SLC27A2O14975 620 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CTNND1O60716 968 aaKnown RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 KRT75O95678 551 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 GUCY2CP25092 1073 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 RANBP1P43487 201 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 CAV1Q03135 178 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 TJAP1Q5JTD0 557 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 RSRC2Q7L4I2 434 aaKnown RBP8.49□□□□□ -1.05
SYNE1-210ENST00000409694 KRT28Q7Z3Y7 464 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 RAB42Q8N4Z0 105 aa8.49□□□□□ -1.05
SYNE1-210ENST00000409694 MAGEB5Q9BZ81 275 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms