RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 HOXD10P28358 340 aa23.3■■□□□ 1.32
VSX1-203ENST00000409285 CCND2P30279 289 aa23.3■■□□□ 1.32
VSX1-203ENST00000409285 IL31RAQ8NI17 732 aa23.3■■□□□ 1.32
VSX1-203ENST00000409285 SYNGAP1Q96PV0 1343 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 PRMT2P55345 433 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 MRPS9P82933 396 aaKnown RBP23.29■■□□□ 1.32
VSX1-203ENST00000409285 IRF5Q13568 498 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 TTC38Q5R3I4 469 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 OLFML2BQ68BL8 750 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 NIPA1Q7RTP0 329 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 SRRDQ9UH36 339 aa23.29■■□□□ 1.32
VSX1-203ENST00000409285 LETM2Q2VYF4 491 aa23.28■■□□□ 1.32
VSX1-203ENST00000409285 FAM173BQ6P4H8 233 aa23.28■■□□□ 1.32
VSX1-203ENST00000409285 NPLOC4Q8TAT6 608 aa23.28■■□□□ 1.32
VSX1-203ENST00000409285 ZNF396Q96N95 335 aaPredicted RBP23.28■■□□□ 1.32
VSX1-203ENST00000409285 POLR3EQ9NVU0 708 aa23.28■■□□□ 1.32
VSX1-203ENST00000409285 WNT7AO00755 349 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 FLT3LGP49771 235 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 UBXN2AP68543 259 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 PRKCZQ05513 592 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 STXBP2Q15833 593 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 CEP55Q53EZ4 464 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 INPP4AQ96PE3 977 aaPredicted RBP23.27■■□□□ 1.32
VSX1-203ENST00000409285 TINF2Q9BSI4 451 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.27■■□□□ 1.32
VSX1-203ENST00000409285 UBIAD1Q9Y5Z9 338 aa23.27■■□□□ 1.32
VSX1-203ENST00000409285 MORC2Q9Y6X9 1032 aaPredicted RBP23.27■■□□□ 1.32
VSX1-203ENST00000409285 IGLV3-22A0A075B6J6 115 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 FAM86B1E9PN63 330 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 EIF3JO75822 258 aaKnown RBP23.26■■□□□ 1.31
VSX1-203ENST00000409285 FAM86B2P0C5J1 330 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 SETQ01105 290 aaPredicted RBP23.26■■□□□ 1.31
VSX1-203ENST00000409285 Q4G0T1 1027 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 TRMT44Q8IYL2 757 aaKnown RBP23.26■■□□□ 1.31
VSX1-203ENST00000409285 TNPO1Q92973 898 aaKnown RBP23.26■■□□□ 1.31
VSX1-203ENST00000409285 LENG9Q96B70 501 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 GABRQQ9UN88 632 aa23.26■■□□□ 1.31
VSX1-203ENST00000409285 MEIS1O00470 390 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 CCNT1O60563 726 aaKnown RBP23.25■■□□□ 1.31
VSX1-203ENST00000409285 ECM2O94769 699 aaPredicted RBP23.25■■□□□ 1.31
VSX1-203ENST00000409285 BMP15O95972 392 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 PDE4DQ08499 809 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 CLEC17AQ6ZS10 378 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 ARMCX2Q7L311 632 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 MXRA8Q9BRK3 442 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 CFAP45Q9UL16 551 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 PCDHB6Q9Y5E3 794 aa23.25■■□□□ 1.31
VSX1-203ENST00000409285 TDP2O95551 362 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 ITGB5P18084 799 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 CYP2B6P20813 491 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 NASPP49321 788 aaPredicted RBP23.24■■□□□ 1.31
VSX1-203ENST00000409285 DNM1Q05193 864 aaKnown RBP23.24■■□□□ 1.31
VSX1-203ENST00000409285 COL13A1Q5TAT6 717 aaPredicted RBP23.24■■□□□ 1.31
VSX1-203ENST00000409285 GPRASP2Q96D09 838 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 USP28Q96RU2 1077 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 RTEL1Q9NZ71 1219 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 DDX25Q9UHL0 483 aaKnown RBP23.24■■□□□ 1.31
VSX1-203ENST00000409285 LAD1O00515 517 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 MAFGO15525 162 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 MYCLP12524 364 aaPredicted RBP23.24■■□□□ 1.31
VSX1-203ENST00000409285 ZNF76P36508 570 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 KRT85P78386 507 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 NBR1Q14596 966 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 GNPTABQ3T906 1256 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 ANO1Q5XXA6 986 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 VTA1Q9NP79 307 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 JADE2Q9NQC1 790 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 CEP131Q9UPN4 1083 aa23.24■■□□□ 1.31
VSX1-203ENST00000409285 TBX3O15119 743 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 NEMFO60524 1076 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 RGS20O76081 388 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 YEATS4O95619 227 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 OTOP1Q7RTM1 612 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 CDHR1Q96JP9 859 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 KATNBL1Q9H079 304 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 KCNMB3Q9NPA1 279 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.23■■□□□ 1.31
VSX1-203ENST00000409285 FLRT1Q9NZU1 646 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 FRMPD3Q5JV73 1810 aa23.23■■□□□ 1.31
VSX1-203ENST00000409285 SLC37A4O43826 429 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 SNAI1O95863 264 aaPredicted RBP23.22■■□□□ 1.31
VSX1-203ENST00000409285 ATP2B1P20020 1258 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 ICAM3P32942 547 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 MCM7P33993 719 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 PTPAQ15257 358 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 SF3A1Q15459 793 aaKnown RBP23.22■■□□□ 1.31
VSX1-203ENST00000409285 CYP2W1Q8TAV3 490 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 PXYLP1Q8TE99 480 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 ABHD16BQ9H3Z7 469 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 NRBP1Q9UHY1 535 aa23.22■■□□□ 1.31
VSX1-203ENST00000409285 ATP2C1P98194 919 aaPredicted RBP23.21■■□□□ 1.31
VSX1-203ENST00000409285 MTMR1Q13613 665 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 ZNF174Q15697 407 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 CCL14Q16627 93 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 PRR16Q569H4 304 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 NLRX1Q86UT6 975 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 C4orf32Q8N8J7 132 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 ETNPPLQ8TBG4 499 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 FTOQ9C0B1 505 aaKnown RBP eCLIP23.21■■□□□ 1.31
VSX1-203ENST00000409285 SCAND2PQ9GZW5 306 aaPredicted RBP23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms