RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 TMEM260Q9NX78 707 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 HDAC6Q9UBN7 1215 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 CCNL1Q9UK58 526 aaPredicted RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 HPCAL4Q9UM19 191 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 SNX12Q9UMY4 172 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 JRKLQ9Y4A0 524 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 DAGLAQ9Y4D2 1042 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 AGPSO00116 658 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 KRT86O43790 486 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 GYS1P13807 737 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 SHMT1P34896 483 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 CKAP4Q07065 602 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 ZNF543Q08ER8 600 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 TBC1D8BQ0IIM8 1120 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 TRAPPC3LQ5T215 181 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 PDXDC1Q6P996 788 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 KCNK18Q7Z418 384 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 TEX2Q8IWB9 1127 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 SP8Q8IXZ3 490 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 REXO1Q8N1G1 1221 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 RNF10Q8N5U6 811 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 LARP4BQ92615 738 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 CEP63Q96MT8 703 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 NUDT12Q9BQG2 462 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 NDST4Q9H3R1 872 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 PDE11AQ9HCR9 933 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 LRRC4BQ9NT99 713 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 MAGEC2Q9UBF1 373 aaPredicted RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 PCDHA13Q9Y5I0 950 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 PARP14Q460N5 1801 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 WDR81Q562E7 1941 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 NUTM2BA6NNL0 878 aaPredicted RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 NUTM2EB1AL46 878 aaPredicted RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 CES2O00748 559 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 MYBP10242 640 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 GCFC2P16383 781 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 ADCY7P51828 1080 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 FKBP1AP62942 108 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 SPIRE1Q08AE8 756 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 SF3B2Q13435 895 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 CALCRLQ16602 461 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 CCDC122Q5T0U0 273 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 EPM2AIP1Q7L775 607 aaPredicted RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 TEX11Q8IYF3 940 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 CCDC155Q8N6L0 562 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 GOLGA5Q8TBA6 731 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 RBM17Q96I25 401 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 NOC4LQ9BVI4 516 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 SUGCTQ9HAC7 445 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 ZNHIT6Q9NWK9 470 aaKnown RBP4.3□□□□□ -1.72
RTN4-209ENST00000405240 GUCA1BQ9UMX6 200 aa4.3□□□□□ -1.72
RTN4-209ENST00000405240 POLRMTO00411 1230 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 TLR2O60603 784 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 N4BP1O75113 896 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 EPB41P11171 864 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 MCM6Q14566 821 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 LETM2Q2VYF4 491 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 HHIPL2Q6UWX4 724 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CCDC84Q86UT8 332 aaPredicted RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 CNBD1Q8NA66 436 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 TRIM58Q8NG06 486 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 OLIG1Q8TAK6 271 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 COG1Q8WTW3 980 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CALML4Q96GE6 196 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 NAP1L4Q99733 375 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 CPVLQ9H3G5 476 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 DDX4Q9NQI0 724 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 AIPL1Q9NZN9 384 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 ANKIB1Q9P2G1 1089 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 BIN2Q9UBW5 565 aaPredicted RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 SAP30BPQ9UHR5 308 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 SALL4Q9UJQ4 1053 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 GGA1Q9UJY5 639 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 TFR2Q9UP52 801 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 DUSP10Q9Y6W6 482 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 SPATA31A6Q5VVP1 1343 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 PITPNM2Q9BZ72 1349 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 TDP2O95551 362 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 FGFR1OPO95684 399 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 PLEKP08567 350 aaPredicted RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 AKR1B1P15121 316 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 USP11P51784 963 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 SLC12A3P55017 1021 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 ASIC1P78348 528 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 NFIL3Q16649 462 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 BMT2Q1RMZ1 405 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 Q4G0T1 1027 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 TRIM59Q8IWR1 403 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 ADGRF4Q8IZF3 695 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CERS5Q8N5B7 392 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 KCTD17Q8N5Z5 321 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 C1orf131Q8NDD1 294 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 TMEM174Q8WUU8 243 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CAVIN3Q969G5 261 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CCDC47Q96A33 483 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 COA1Q9GZY4 146 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 NUCKS1Q9H1E3 243 aaKnown RBP4.29□□□□□ -1.72
RTN4-209ENST00000405240 GANQ9H2C0 597 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 CEP72Q9P209 647 aa4.29□□□□□ -1.72
RTN4-209ENST00000405240 LRWD1Q9UFC0 647 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms