RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SLC7A5Q01650 507 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 NONOQ15233 471 aaKnown RBP eCLIP18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 C2CD5Q86YS7 1000 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 ANKRD13CQ8N6S4 541 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 TBC1D22AQ8WUA7 517 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 EIF3CQ99613 913 aaKnown RBP18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 SH3GLB2Q9NR46 395 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 AARSP49588 968 aaKnown RBP eCLIP18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 AFAP1L1Q8TED9 768 aa18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 SECISBP2LQ93073 1101 aaKnown RBP18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 DHTKD1Q96HY7 919 aaPredicted RBP18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 ARHGAP20Q9P2F6 1191 aa18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 TCP11L1Q9NUJ3 509 aa18.07■□□□□ 0.48
NKX3-1-201ENST00000380871 TUBBP07437 444 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 KIF5AQ12840 1032 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CCDC155Q8N6L0 562 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 GLIS3Q8NEA6 775 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CCDC42Q96M95 316 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 PURBQ96QR8 312 aaKnown RBP18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 MMTAG2Q9BU76 263 aaKnown RBP18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 ACBD3Q9H3P7 528 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 DMGDHQ9UI17 866 aaKnown RBP18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 MYH10P35580 1976 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 NCK2O43639 380 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 OR52Z1P0C646 297 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 NFRKBQ6P4R8 1299 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CCNI2Q6ZMN8 369 aaPredicted RBP18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CREG2Q8IUH2 290 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CRAMP1Q96RY5 1269 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 LRRC1Q9BTT6 524 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 EHD4Q9H223 541 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 VAV2P52735 878 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 DYMQ7RTS9 669 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 POTEDQ86YR6 584 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 SP8Q8IXZ3 490 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 SALL4Q9UJQ4 1053 aa18.06■□□□□ 0.48
NKX3-1-201ENST00000380871 CASZ1Q86V15 1759 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 IVLP07476 585 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 CKAP4Q07065 602 aaKnown RBP18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 SLC20A2Q08357 652 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 REXO1Q8N1G1 1221 aaKnown RBP18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 EHBP1Q8NDI1 1231 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 ANKS1AQ92625 1134 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 IFIH1Q9BYX4 1025 aaKnown RBP18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 VIPAS39Q9H9C1 493 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 ATP6V0A2Q9Y487 856 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 TDP2O95551 362 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 SSBP05455 408 aaKnown RBP eCLIP18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 PDHBP11177 359 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 CRACR2AQ9BSW2 395 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 MTMR4Q9NYA4 1195 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 SERPINB13Q9UIV8 391 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 MYH1P12882 1939 aa18.05■□□□□ 0.48
NKX3-1-201ENST00000380871 MAP9Q49MG5 647 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 CCDC170Q8IYT3 715 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 SNX12Q9UMY4 172 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 TARSL2A2RTX5 802 aaKnown RBP18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 GNA11P29992 359 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 EIF4A3P38919 411 aaKnown RBP18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 IKQ13123 557 aaPredicted RBP18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 CDC42EP5Q6NZY7 148 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 NEK8Q86SG6 692 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 MMRN2Q9H8L6 949 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 RPS6KA5O75582 802 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 CHRNA5P30532 468 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 HOXA10P31260 410 aaPredicted RBP18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 SPA17Q15506 151 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 SLC27A3Q5K4L6 730 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 TMC4Q7Z404 712 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 GOLGA6L1Q8N7Z2 621 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 DAGLBQ8NCG7 672 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 NUP58Q9BVL2 599 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 COA1Q9GZY4 146 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 PCDHA13Q9Y5I0 950 aa18.04■□□□□ 0.48
NKX3-1-201ENST00000380871 BICDL2A1A5D9 508 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 TAL1P17542 331 aaPredicted RBP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 KIF11P52732 1056 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 TTC19Q6DKK2 380 aaPredicted RBP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 SND1Q7KZF4 910 aaKnown RBP eCLIP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 KRT25Q7Z3Z0 450 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 NOC3LQ8WTT2 800 aaKnown RBP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 TSPYL1Q9H0U9 437 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 SNED1Q8TER0 1413 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 MYL1P05976 194 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 DNA2P51530 1060 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 LRRC41Q15345 812 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 ZNF662Q6ZS27 426 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 C15orf52Q6ZUT6 534 aaKnown RBP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 ERGIC2Q96RQ1 377 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 SH2D4AQ9H788 454 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 ANO9A1A5B4 782 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 POTEMA6NI47 508 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 MYMKA6NI61 221 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 USP17L10C9JJH3 530 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 ONECUT3O60422 494 aaPredicted RBP18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 RETREG2Q8NC44 543 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 C7orf25Q9BPX7 421 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 ZMYND12Q9H0C1 365 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 SIK3Q9Y2K2 1263 aa18.03■□□□□ 0.48
NKX3-1-201ENST00000380871 LRRC53A6NM62 1247 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms