RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 DNAJB1P25685 340 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 CAMK2BQ13554 666 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 RSPH3Q86UC2 560 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 CCDC116Q8IYX3 515 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 THUMPD2Q9BTF0 503 aaKnown RBP8.76□□□□□ -1.01
USP48-203ENST00000374732 PLVAPQ9BX97 442 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 HOMER3Q9NSC5 361 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 CABP1Q9NZU7 370 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 MTUS1Q9ULD2 1270 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 LIMCH1Q9UPQ0 1083 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 ZNF711Q9Y462 761 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 ANGPTL3Q9Y5C1 460 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 PCDHGB7Q9Y5F8 929 aa8.76□□□□□ -1.01
USP48-203ENST00000374732 AATKQ6ZMQ8 1374 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 GOLGA8AA7E2F4 631 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 WASLO00401 505 aaPredicted RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 CYP27B1O15528 508 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 TADA3O75528 432 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 CTNNA1P35221 906 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 HNF1BP35680 557 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 RARSP54136 660 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 PRPF38BQ5VTL8 546 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 LRRTM3Q86VH5 581 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 ST7Q9NRC1 585 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 PAIP2BQ9ULR5 123 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 ITSN1Q15811 1721 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 PALM3A6NDB9 673 aaPredicted RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 TTC34A8MYJ7 566 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 NEMFO60524 1076 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 BCAR3O75815 825 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 PNMA6AP0CW24 399 aaPredicted RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 XRCC5P13010 732 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 WEE1P30291 646 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 MKRN4PQ13434 485 aaPredicted RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 ZRSR1Q15695 479 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 WSCD2Q2TBF2 565 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 HSP90AA5PQ58FG0 334 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 TEX35Q5T0J7 233 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 TMEM53Q6P2H8 277 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 LUZP1Q86V48 1076 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 DDX42Q86XP3 938 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP48-203ENST00000374732 SYTL1Q8IYJ3 562 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 IFNL2Q8IZJ0 200 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 MDM1Q8TC05 714 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 OXER1Q8TDS5 423 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 MTMR9Q96QG7 549 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 TCF12Q99081 682 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 CNTN3Q9P232 1028 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 SLIT2O94813 1529 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 RGS12O14924 1447 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 THSD7AQ9UPZ6 1657 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 METP08581 1390 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 SKIP12755 728 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 MUTP22033 750 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 SLC12A2P55011 1212 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 C21orf58P58505 322 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 STK3Q13188 491 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 IGSF11Q5DX21 431 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 CREB3L3Q68CJ9 461 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 SMYD5Q6GMV2 418 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 CCDC121Q6ZUS5 278 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 SIX5Q8N196 739 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 CCDC148Q8NFR7 591 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 ATP6V0A1Q93050 837 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 NIFKQ9BYG3 293 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 GGNBP2Q9H3C7 697 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 NRDE2Q9H7Z3 1164 aa8.75□□□□□ -1.01
USP48-203ENST00000374732 A1CFQ9NQ94 594 aaKnown RBP8.75□□□□□ -1.01
USP48-203ENST00000374732 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.75□□□□□ -1.011e-8■■□□□ 12
USP48-203ENST00000374732 GALNSP34059 522 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 CTCFP49711 727 aaPredicted RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 LIMK1P53667 647 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 PLTPP55058 493 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 CWC27Q6UX04 472 aaKnown RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 TBC1D21Q8IYX1 336 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 PPM1NQ8N819 430 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 FBXO18Q8NFZ0 1043 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 UPF1Q92900 1129 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP48-203ENST00000374732 TTC25Q96NG3 672 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 ZFYVE28Q9HCC9 887 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 USP54Q70EL1 1684 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 TRPM3Q9HCF6 1732 aaPredicted RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 ETFBP38117 255 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 CLNS1AP54105 237 aaKnown RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 TPD52P55327 224 aaPredicted RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 RAC1P63000 192 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 PCSK7Q16549 785 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 CAVIN4Q5BKX8 364 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 ZNF600Q6ZNG1 722 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 INTS8Q75QN2 995 aaKnown RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 GALNT5Q7Z7M9 940 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 TRIM50Q86XT4 487 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 RNF10Q8N5U6 811 aaKnown RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 FATE1Q969F0 183 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 LUC7LQ9NQ29 371 aaKnown RBP8.74□□□□□ -1.01
USP48-203ENST00000374732 GIMAP2Q9UG22 337 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 RREB1Q92766 1687 aa8.74□□□□□ -1.01
USP48-203ENST00000374732 TRAV6A0A075B6T7 132 aa8.73□□□□□ -1.01
USP48-203ENST00000374732 CCDC169A6NNP5 214 aa8.73□□□□□ -1.01
USP48-203ENST00000374732 SPDYE16A6NNV3 312 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms