RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TRMT13Q9NUP7 481 aaKnown RBP25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 MRVI1Q9Y6F6 885 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 RGS20O76081 388 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 MMP3P08254 477 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 CALM1P0DP23 149 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 CALM2P0DP24 149 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 CALM3P0DP25 149 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 ZNF697Q5TEC3 545 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 PSRC1Q6PGN9 363 aaPredicted RBP25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 IL31RAQ8NI17 732 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 EMID1Q96A84 441 aaPredicted RBP25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 CCDC136Q96JN2 1154 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 LRRC2Q9BYS8 371 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 IL23AQ9NPF7 189 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 STXBP5LQ9Y2K9 1186 aa25.1■■□□□ 1.61
CCDC28B-201ENST00000373602 PLEKHA8P1O95397 391 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 ACRP10323 421 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 PTPN11Q06124 597 aaPredicted RBP25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 FAM47CQ5HY64 1035 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 RASIP1Q5U651 963 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 ZNF365Q70YC5 407 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 SGMS1Q86VZ5 419 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 FCHSD1Q86WN1 690 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 SRBD1Q8N5C6 995 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 SLC12A7Q9Y666 1083 aa25.09■■□□□ 1.61
CCDC28B-201ENST00000373602 RXRAP19793 462 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 LAMC2Q13753 1193 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 TSGA10IPQ3SY00 556 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 KCNV1Q6PIU1 500 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 GUCD1Q96NT3 240 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 NEK1Q96PY6 1258 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 WNT8AQ9H1J5 351 aa25.08■■□□□ 1.61
CCDC28B-201ENST00000373602 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 CYP2C9P11712 490 aa25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 CASTP20810 708 aaKnown RBP25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 CCND2P30279 289 aa25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 CCL23P55773 120 aa25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 FAM161BQ96MY7 647 aa25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 SEC63Q9UGP8 760 aaKnown RBP25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 FRMPD4Q14CM0 1322 aa25.07■■□□□ 1.6
CCDC28B-201ENST00000373602 DGKDQ16760 1214 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 RASEFQ8IZ41 740 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 CMTR1Q8N1G2 835 aaKnown RBP25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 FANCBQ8NB91 859 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 PPP1R13LQ8WUF5 828 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 KAT2BQ92831 832 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 SEMA6BQ9H3T3 888 aa25.06■■□□□ 1.6
CCDC28B-201ENST00000373602 TGFB3P10600 412 aa25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 EXOSC10Q01780 885 aaKnown RBP25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 RAB11FIP4Q86YS3 637 aa25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 DHX37Q8IY37 1157 aaKnown RBP25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 PPTC7Q8NI37 304 aa25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 HERVK_113Q902F9 699 aa25.05■■□□□ 1.6
CCDC28B-201ENST00000373602 TMEM265A0A087WTH1 108 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 PIK3CDO00329 1044 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 ADCK5Q3MIX3 580 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 CELF3Q5SZQ8 465 aaKnown RBP25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 MYSM1Q5VVJ2 828 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 TMTC3Q6ZXV5 915 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 DHX32Q7L7V1 743 aaKnown RBP25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 SESTD1Q86VW0 696 aa25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 ZFP91Q96JP5 570 aaPredicted RBP25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 TTYH1Q9H313 450 aaPredicted RBP25.04■■□□□ 1.6
CCDC28B-201ENST00000373602 STAM2O75886 525 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 FGBP02675 491 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 HOXD8P13378 290 aaPredicted RBP25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 SP2Q02086 613 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 KRT32Q14532 448 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 USP17L6PQ6QN14 398 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 SYNE3Q6ZMZ3 975 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 MICU3Q86XE3 530 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 RPUSD2Q8IZ73 545 aaKnown RBP25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 SMARCC2Q8TAQ2 1214 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 CUL5Q93034 780 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 VWCEQ96DN2 955 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 SCLYQ96I15 445 aa25.03■■□□□ 1.6
CCDC28B-201ENST00000373602 MEIS2O14770 477 aa25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 GGPS1O95749 300 aa25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 UBA1P22314 1058 aaKnown RBP25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 CHMP4BP1P59074 171 aa25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 MRPS9P82933 396 aaKnown RBP25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 APOA5Q6Q788 366 aa25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 GPKOWQ92917 476 aaPredicted RBP eCLIP25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 TCEANC2Q96MN5 208 aa25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 MTIF3Q9H2K0 278 aaKnown RBP25.02■■□□□ 1.6
CCDC28B-201ENST00000373602 PITPNM1O00562 1244 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 PPFIA4O75335 1185 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 ICAM3P32942 547 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 GNPTABQ3T906 1256 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 CCDC82Q8N4S0 544 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 INPP4AQ96PE3 977 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 CDX2Q99626 313 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 KATNAL1Q9BW62 490 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 CXXC1Q9P0U4 656 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 MYH7BA7E2Y1 1941 aa25.01■■□□□ 1.59
CCDC28B-201ENST00000373602 HAS3O00219 553 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 F2P00734 622 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 DNAJB2P25686 324 aa25■■□□□ 1.59
CCDC28B-201ENST00000373602 PSEN2P49810 448 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms