RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 GHRHRQ02643 423 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 BFSP2Q13515 415 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 CHST3Q7LGC8 479 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 RETREG2Q8NC44 543 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 PPM1EQ8WY54 764 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 KAT2BQ92831 832 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 PRDM6Q9NQX0 595 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 DDX41Q9UJV9 622 aaKnown RBP16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 SUPT16HQ9Y5B9 1047 aaKnown RBP16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 PALM3A6NDB9 673 aaPredicted RBP16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 ZBTB5O15062 677 aa16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 EIF3JO75822 258 aaKnown RBP16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 PTH1RQ03431 593 aa16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 SESTD1Q86VW0 696 aa16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 NOD1Q9Y239 953 aa16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 DOCK5Q9H7D0 1870 aa16.82■□□□□ 0.28
PRPF40A-201ENST00000354363 CYP21A2P08686 494 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 ACTN1P12814 892 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 CASTP20810 708 aaKnown RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 CHMLP26374 656 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 TRDNQ13061 729 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 PTGISQ16647 500 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 SLC35G1Q2M3R5 365 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 PPP2R2DQ66LE6 453 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 RUFY2Q8WXA3 655 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 EMID1Q96A84 441 aaPredicted RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 CTAGE1Q96RT6 745 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 IGFBP4P22692 258 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 GRM4Q14833 912 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 DGKDQ16760 1214 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 GDF6Q6KF10 455 aaPredicted RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 SYMPKQ92797 1274 aaKnown RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 SENP2Q9HC62 589 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 MAP3K20Q9NYL2 800 aaKnown RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 PCDHA1Q9Y5I3 950 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 MRVI1Q9Y6F6 885 aa16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 U3KPZ7 1027 aaPredicted RBP16.81■□□□□ 0.28
PRPF40A-201ENST00000354363 TJAP1Q5JTD0 557 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 STOX1Q6ZVD7 989 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 CAGE1Q8TC20 777 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 PDCD2LQ9BRP1 358 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 FTOQ9C0B1 505 aaKnown RBP eCLIP16.8■□□□□ 0.282e-6■■■■□ 19.3
PRPF40A-201ENST00000354363 RIOX1Q9H6W3 641 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 TAF6LQ9Y6J9 622 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 TTC28Q96AY4 2481 aa16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 PRRC2BQ5JSZ5 2229 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-201ENST00000354363 IFIT3O14879 490 aaKnown RBP16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 RGS20O76081 388 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 MYCLP12524 364 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 HOXA13P31271 388 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 LAMC2Q13753 1193 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 CCDC85BQ15834 202 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 TMEM67Q5HYA8 995 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 HOMER1Q86YM7 354 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 SAMD3Q8N6K7 520 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 CCDC155Q8N6L0 562 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 PPTC7Q8NI37 304 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 AFAP1L1Q8TED9 768 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 DHX38Q92620 1227 aaKnown RBP16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 PIGSQ96S52 555 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 SLC9A7Q96T83 725 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 GTF2IRD1Q9UHL9 959 aa16.79■□□□□ 0.28
PRPF40A-201ENST00000354363 REV3LO60673 3130 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 PSEN2P49810 448 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 PGM5Q15124 567 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 DHX37Q8IY37 1157 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 PHOSPHO2Q8TCD6 241 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 HDAC6Q9UBN7 1215 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 TCF20Q9UGU0 1960 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 KAT6AQ92794 2004 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 ERICH2A1L162 156 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 E7EWF7 191 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 HAS3O00219 553 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 CYTH3O43739 400 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 CA3P07451 260 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 ZNF286BP0CG31 522 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 MFSD10Q14728 455 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 GPNMBQ14956 572 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 WTAPQ15007 396 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 RALYLQ86SE5 291 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 VSIG10LQ86VR7 867 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 NCOA7Q8NI08 942 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 IL31RAQ8NI17 732 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 ALG1Q9BT22 464 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 KATNAL1Q9BW62 490 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 THEGQ9P2T0 379 aa16.78■□□□□ 0.28
PRPF40A-201ENST00000354363 SGSM2O43147 1006 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 F2P00734 622 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 HOXD8P13378 290 aaPredicted RBP16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 SELPP16109 830 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 RBL2Q08999 1139 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 TROAPQ12815 778 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 TRAF1Q13077 416 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 MYSM1Q5VVJ2 828 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 KCNV1Q6PIU1 500 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 C7orf31Q8N865 590 aa16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 ATXN2LQ8WWM7 1075 aaKnown RBP16.77■□□□□ 0.27
PRPF40A-201ENST00000354363 PNMA6FA0A0J9YX94 578 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 GCOM1H8Y6P7 765 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 BAIAP3O94812 1187 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms