RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DACT2Q5SW24 774 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 SIAH1Q8IUQ4 282 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 GPR161Q8N6U8 529 aaKnown RBP21.57■■□□□ 1.04
COL9A3-201ENST00000343916 GOLGA1Q92805 767 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 PI4KBQ9UBF8 816 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 SIPA1L1O43166 1804 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 PNMA6AP0CW24 399 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-201ENST00000343916 PPP1R2P41236 205 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 CDC37Q16543 378 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-201ENST00000343916 COBLL1Q53SF7 1204 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 SLFN13Q68D06 897 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 PARD6BQ9BYG5 372 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 ATF5Q9Y2D1 282 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-201ENST00000343916 C10orf71Q711Q0 1435 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 ZRANB2O95218 330 aaKnown RBP eCLIP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 HERVK_113P62684 666 aa21.56■■□□□ 1.04
COL9A3-201ENST00000343916 BMS1Q14692 1282 aaKnown RBP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 STRIP1Q5VSL9 837 aa21.56■■□□□ 1.04
COL9A3-201ENST00000343916 SRGAP1Q7Z6B7 1085 aa21.56■■□□□ 1.04
COL9A3-201ENST00000343916 DHX36Q9H2U1 1008 aaKnown RBP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 SSBP05455 408 aaKnown RBP eCLIP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 TAL1P17542 331 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 CHRNA5P30532 468 aa21.56■■□□□ 1.04
COL9A3-201ENST00000343916 NAPGQ99747 312 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-201ENST00000343916 KANSL2Q9H9L4 492 aa21.56■■□□□ 1.04
COL9A3-201ENST00000343916 ICA1Q05084 483 aa21.55■■□□□ 1.04
COL9A3-201ENST00000343916 RABGGTAQ92696 567 aa21.55■■□□□ 1.04
COL9A3-201ENST00000343916 TRIM34Q9BYJ4 488 aa21.55■■□□□ 1.04
COL9A3-201ENST00000343916 MEA1Q16626 185 aa21.55■■□□□ 1.04
COL9A3-201ENST00000343916 AOC3Q16853 763 aa21.55■■□□□ 1.04
COL9A3-201ENST00000343916 GUF1Q8N442 669 aaKnown RBP21.55■■□□□ 1.04
COL9A3-201ENST00000343916 E9PMD0 336 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 GPIHBP1Q8IV16 184 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 P2RX7Q99572 595 aaKnown RBP21.54■■□□□ 1.04
COL9A3-201ENST00000343916 IDI2Q9BXS1 227 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 ANO3Q9BYT9 981 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 TDRD3Q9H7E2 651 aaKnown RBP21.54■■□□□ 1.04
COL9A3-201ENST00000343916 TBC1D7Q9P0N9 293 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 EPHB6O15197 1021 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 CACNB1Q02641 598 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-201ENST00000343916 EHHADHQ08426 723 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 FKBP15Q5T1M5 1219 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 MKL1Q969V6 931 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 DNAJC19Q96DA6 116 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 ERGIC2Q96RQ1 377 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 NUP58Q9BVL2 599 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 FGFBP2Q9BYJ0 223 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 NHEJ1Q9H9Q4 299 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-201ENST00000343916 NYAP2Q9P242 653 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 KIAA1024Q9UPX6 916 aa21.54■■□□□ 1.04
COL9A3-201ENST00000343916 ENC1O14682 589 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 GCFC2P16383 781 aaKnown RBP21.53■■□□□ 1.04
COL9A3-201ENST00000343916 STAT3P40763 770 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 JAG1P78504 1218 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 ZBED6P86452 979 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 RAD51AP2Q09MP3 1159 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 USH1GQ495M9 461 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 NDST4Q9H3R1 872 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 FAM207AQ9NSI2 230 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-201ENST00000343916 ARFGEF1Q9Y6D6 1849 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 SLX4Q8IY92 1834 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 POTEB3A0JP26 581 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 POTECB2RU33 542 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 F5H6K3 240 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 H0YIN7 160 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 MEIS2O14770 477 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 KLRC3Q07444 240 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 COASYQ13057 564 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 VWA3BQ502W6 1294 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 CCDC122Q5T0U0 273 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 CC2D1AQ6P1N0 951 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-201ENST00000343916 POTEBQ6S5H4 581 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 RETREG2Q8NC44 543 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 MYO1AQ9UBC5 1043 aa21.53■■□□□ 1.04
COL9A3-201ENST00000343916 RCCD1A6NED2 376 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 PLEKP08567 350 aaPredicted RBP21.52■■□□□ 1.04
COL9A3-201ENST00000343916 CYP27A1Q02318 531 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 TATDN1Q6P1N9 297 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 DCAF4Q8WV16 495 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 ZNHIT6Q9NWK9 470 aaKnown RBP21.52■■□□□ 1.04
COL9A3-201ENST00000343916 NPHP3-ACAD11A0A0J9YXS1 232 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 IKQ13123 557 aaPredicted RBP21.52■■□□□ 1.04
COL9A3-201ENST00000343916 LRRC55Q6ZSA7 311 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 CEP112Q8N8E3 955 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 LACRTQ9GZZ8 138 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 HAUS4Q9H6D7 363 aa21.52■■□□□ 1.04
COL9A3-201ENST00000343916 SASH3O75995 380 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 PLA2G4AP47712 749 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 NCAPH2Q6IBW4 605 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 CCDC155Q8N6L0 562 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 PANK4Q9NVE7 773 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 HDAC6Q9UBN7 1215 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 ABCB5Q2M3G0 1257 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 KIAA1328Q86T90 577 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 MRIQ9BWK5 157 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 ANKZF1Q9H8Y5 726 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 KCNMB3Q9NPA1 279 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 DUSP10Q9Y6W6 482 aa21.51■■□□□ 1.03
COL9A3-201ENST00000343916 TNS1Q9HBL0 1735 aaKnown RBP21.51■■□□□ 1.03
COL9A3-201ENST00000343916 AMPD2Q01433 879 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms