RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 SRBD1Q8N5C6 995 aaKnown RBP23.3■■□□□ 1.32
SYNE2-201ENST00000341472 SEC63Q9UGP8 760 aaKnown RBP23.3■■□□□ 1.32
SYNE2-201ENST00000341472 RXRAP19793 462 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 CASTP20810 708 aaKnown RBP23.29■■□□□ 1.32
SYNE2-201ENST00000341472 PGM5Q15124 567 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 TSGA10IPQ3SY00 556 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 NFRKBQ6P4R8 1299 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 KCNV1Q6PIU1 500 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 DHX32Q7L7V1 743 aaKnown RBP23.29■■□□□ 1.32
SYNE2-201ENST00000341472 FANCBQ8NB91 859 aa23.29■■□□□ 1.32
SYNE2-201ENST00000341472 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.29■■□□□ 1.32
SYNE2-201ENST00000341472 TRMT13Q9NUP7 481 aaKnown RBP23.29■■□□□ 1.32
SYNE2-201ENST00000341472 PLEKHA8P1O95397 391 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 CCND2P30279 289 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 CHMP4BP1P59074 171 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 EXOSC10Q01780 885 aaKnown RBP23.28■■□□□ 1.32
SYNE2-201ENST00000341472 TMEM240Q5SV17 173 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 SGMS1Q86VZ5 419 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 DHX37Q8IY37 1157 aaKnown RBP23.28■■□□□ 1.32
SYNE2-201ENST00000341472 RASEFQ8IZ41 740 aa23.28■■□□□ 1.32
SYNE2-201ENST00000341472 NOC4LQ9BVI4 516 aaKnown RBP23.28■■□□□ 1.32
SYNE2-201ENST00000341472 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.27■■□□□ 1.32
SYNE2-201ENST00000341472 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.27■■□□□ 1.32
SYNE2-201ENST00000341472 NEFLP07196 543 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 MMP3P08254 477 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 ACRP10323 421 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 CCL23P55773 120 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 PTPN11Q06124 597 aaPredicted RBP23.27■■□□□ 1.32
SYNE2-201ENST00000341472 KRT32Q14532 448 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 DGKDQ16760 1214 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 ZNF365Q70YC5 407 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 RAB11FIP4Q86YS3 637 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 CMTR1Q8N1G2 835 aaKnown RBP23.27■■□□□ 1.32
SYNE2-201ENST00000341472 CUL5Q93034 780 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 EMID1Q96A84 441 aaPredicted RBP23.27■■□□□ 1.32
SYNE2-201ENST00000341472 IL23AQ9NPF7 189 aa23.27■■□□□ 1.32
SYNE2-201ENST00000341472 RGS20O76081 388 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 TGFB3P10600 412 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 CYP2C9P11712 490 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 ZNF697Q5TEC3 545 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 CCDC82Q8N4S0 544 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 IL31RAQ8NI17 732 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 SMARCC2Q8TAQ2 1214 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 UMODL1Q5DID0 1318 aa23.26■■□□□ 1.31
SYNE2-201ENST00000341472 LCTP09848 1927 aa23.25■■□□□ 1.31
SYNE2-201ENST00000341472 FGBP02675 491 aa23.25■■□□□ 1.31
SYNE2-201ENST00000341472 PSRC1Q6PGN9 363 aaPredicted RBP23.25■■□□□ 1.31
SYNE2-201ENST00000341472 RPUSD2Q8IZ73 545 aaKnown RBP23.25■■□□□ 1.31
SYNE2-201ENST00000341472 PPP1R13LQ8WUF5 828 aa23.25■■□□□ 1.31
SYNE2-201ENST00000341472 ZFP91Q96JP5 570 aaPredicted RBP23.25■■□□□ 1.31
SYNE2-201ENST00000341472 HMGB1P09429 215 aaKnown RBP23.24■■□□□ 1.31
SYNE2-201ENST00000341472 ADCK5Q3MIX3 580 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 CELF3Q5SZQ8 465 aaKnown RBP23.24■■□□□ 1.31
SYNE2-201ENST00000341472 MYSM1Q5VVJ2 828 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 USP17L6PQ6QN14 398 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 TMTC3Q6ZXV5 915 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 MICU3Q86XE3 530 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 PPTC7Q8NI37 304 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 TCEANC2Q96MN5 208 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 FAM161BQ96MY7 647 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 SEMA6BQ9H3T3 888 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 PSTPIP2Q9H939 334 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 STXBP5LQ9Y2K9 1186 aa23.24■■□□□ 1.31
SYNE2-201ENST00000341472 PIK3CDO00329 1044 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 PPFIA4O75335 1185 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 STAM2O75886 525 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 GNPTABQ3T906 1256 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 RETREG2Q8NC44 543 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 KAT2BQ92831 832 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 WNT8AQ9H1J5 351 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 MLXIPQ9HAP2 919 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 NOD1Q9Y239 953 aa23.23■■□□□ 1.31
SYNE2-201ENST00000341472 hCG_1642624A0A1W2PR95 340 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 MEIS2O14770 477 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 GGPS1O95749 300 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 SP2Q02086 613 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 RASIP1Q5U651 963 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 HERVK_113Q902F9 699 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 SPATA33Q96N06 139 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 MTIF3Q9H2K0 278 aaKnown RBP23.22■■□□□ 1.31
SYNE2-201ENST00000341472 RBM28Q9NW13 759 aaKnown RBP23.22■■□□□ 1.31
SYNE2-201ENST00000341472 RTEL1Q9NZ71 1219 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 BAZ2BQ9UIF8 2168 aaKnown RBP23.22■■□□□ 1.31
SYNE2-201ENST00000341472 LRRC37A2A6NM11 1700 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 LTBP2Q14767 1821 aa23.22■■□□□ 1.31
SYNE2-201ENST00000341472 ZBTB43O43298 467 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 SORBS3O60504 671 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 MRPS9P82933 396 aaKnown RBP23.21■■□□□ 1.31
SYNE2-201ENST00000341472 XRRA1Q6P2D8 792 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 APOA5Q6Q788 366 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 SESTD1Q86VW0 696 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 KCNB2Q92953 911 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 SCLYQ96I15 445 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 BRPF3Q9ULD4 1205 aa23.21■■□□□ 1.31
SYNE2-201ENST00000341472 SPATA31C2B4DYI2 1134 aa23.2■■□□□ 1.3
SYNE2-201ENST00000341472 ICAM3P32942 547 aa23.2■■□□□ 1.3
SYNE2-201ENST00000341472 PSEN2P49810 448 aa23.2■■□□□ 1.3
SYNE2-201ENST00000341472 FGD1P98174 961 aa23.2■■□□□ 1.3
SYNE2-201ENST00000341472 BFSP2Q13515 415 aa23.2■■□□□ 1.3
SYNE2-201ENST00000341472 PTGISQ16647 500 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms