RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 AGPSO00116 658 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 DNA2P51530 1060 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 KIF11P52732 1056 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 SPA17Q15506 151 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 RRAGAQ7L523 313 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 SRLQ86TD4 932 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 CCDC170Q8IYT3 715 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 MSL3Q8N5Y2 521 aaKnown RBP13.69□□□□□ -0.22
VPS33B-201ENST00000333371 BBXQ8WY36 941 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-201ENST00000333371 CCDC47Q96A33 483 aaKnown RBP13.69□□□□□ -0.22
VPS33B-201ENST00000333371 AK8Q96MA6 479 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 RTFDC1Q9BY42 306 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-201ENST00000333371 TRIM34Q9BYJ4 488 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 NDST4Q9H3R1 872 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 RABEP2Q9H5N1 569 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 C6orf50Q9HD87 102 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 BBOX1O75936 387 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 VWA3BQ502W6 1294 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 GALNT17Q6IS24 598 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 CCNI2Q6ZMN8 369 aaPredicted RBP13.69□□□□□ -0.22
VPS33B-201ENST00000333371 SPZ1Q9BXG8 430 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 CD209Q9NNX6 404 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 RSPH14Q9UHP6 348 aa13.69□□□□□ -0.22
VPS33B-201ENST00000333371 C6orf229H3BNL8 230 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 BUB1O43683 1085 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 GFPT1Q06210 699 aaPredicted RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CKAP4Q07065 602 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 SOGA3Q5TF21 947 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CENPPQ6IPU0 288 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CNNM4Q6P4Q7 775 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 C15orf52Q6ZUT6 534 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 SV2BQ7L1I2 683 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 FAM114A1Q8IWE2 563 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 REXO1Q8N1G1 1221 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 LRRC47Q8N1G4 583 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 RETREG2Q8NC44 543 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 EHBP1Q8NDI1 1231 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CALML4Q96GE6 196 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 DEF6Q9H4E7 631 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 MED4Q9NPJ6 270 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 SEC63Q9UGP8 760 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 SNX12Q9UMY4 172 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 PLAGL2Q9UPG8 496 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 AKR1B10O60218 316 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 DDR1Q08345 913 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 ECM1Q16610 540 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 TEX11Q8IYF3 940 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CUEDC2Q9H467 287 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 SH2D4AQ9H788 454 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 NLRC4Q9NPP4 1024 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 CWC15Q9P013 229 aaKnown RBP13.68□□□□□ -0.22
VPS33B-201ENST00000333371 TBC1D7Q9P0N9 293 aa13.68□□□□□ -0.22
VPS33B-201ENST00000333371 TUBBP07437 444 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 SLURP2P0DP57 97 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 AARSP49588 968 aaKnown RBP eCLIP13.67□□□□□ -0.224e-6■■■■■ 30.6
VPS33B-201ENST00000333371 CALCRLQ16602 461 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 UBE2SQ16763 222 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 KCTD19Q17RG1 926 aaPredicted RBP13.67□□□□□ -0.22
VPS33B-201ENST00000333371 ZNF662Q6ZS27 426 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 AFAP1L1Q8TED9 768 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 FGFBP2Q9BYJ0 223 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 EHD4Q9H223 541 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 ACBD3Q9H3P7 528 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 MYH7BA7E2Y1 1941 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 POLRMTO00411 1230 aaKnown RBP13.67□□□□□ -0.22
VPS33B-201ENST00000333371 GNA11P29992 359 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 SND1Q7KZF4 910 aaKnown RBP eCLIP13.67□□□□□ -0.22
VPS33B-201ENST00000333371 LARP4BQ92615 738 aaKnown RBP13.67□□□□□ -0.22
VPS33B-201ENST00000333371 MS4A14Q96JA4 679 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 CRACR2AQ9BSW2 395 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 TANGO6Q9C0B7 1094 aa13.67□□□□□ -0.22
VPS33B-201ENST00000333371 A0A1W2PQJ5 194 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 ANO9A1A5B4 782 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 TARSL2A2RTX5 802 aaKnown RBP13.66□□□□□ -0.22
VPS33B-201ENST00000333371 HMGB2P26583 209 aaKnown RBP13.66□□□□□ -0.22
VPS33B-201ENST00000333371 AMPD3Q01432 767 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 CACNB1Q02641 598 aaPredicted RBP13.66□□□□□ -0.22
VPS33B-201ENST00000333371 RASSF7Q02833 373 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 ENOX2Q16206 610 aaKnown RBP13.66□□□□□ -0.22
VPS33B-201ENST00000333371 MAP9Q49MG5 647 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 MTMR8Q96EF0 704 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 CDK5RAP3Q96JB5 506 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 MTMR9Q96QG7 549 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 VIPAS39Q9H9C1 493 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 GPCPD1Q9NPB8 672 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 SLC1A4P43007 532 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 PPP4CP60510 307 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 TTC19Q6DKK2 380 aaPredicted RBP13.66□□□□□ -0.22
VPS33B-201ENST00000333371 C16orf86Q6ZW13 317 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 SPATA4Q8NEY3 305 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 NEDD1Q8NHV4 660 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 SNX29Q8TEQ0 813 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 DDX12PQ92771 950 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 OSBPL9Q96SU4 736 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 MAGEF1Q9HAY2 307 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 POLD4Q9HCU8 107 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 JRKLQ9Y4A0 524 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 TACC1O75410 805 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 TNNI2P48788 182 aa13.66□□□□□ -0.22
VPS33B-201ENST00000333371 FIGNQ5HY92 759 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms