RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 FAM86B2P0C5J1 330 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 DSG3P32926 999 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 IREB2P48200 963 aaKnown RBP17.49■□□□□ 0.39
LSM6-201ENST00000296581 MCF2L2Q86YR7 1114 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 SAMD3Q8N6K7 520 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 STAMQ92783 540 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 ATG4CQ96DT6 458 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 CCDC94Q9BW85 323 aaPredicted RBP17.49■□□□□ 0.39
LSM6-201ENST00000296581 CSADQ9Y600 493 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 SMTNL1A8MU46 457 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 POTECB2RU33 542 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 MARCH6O60337 910 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 PLCB2Q00722 1185 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 GRB10Q13322 594 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 CUL4BQ13620 913 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 PRR16Q569H4 304 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 CATSPERGQ6ZRH7 1159 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 CPXCR1Q8N123 301 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 REPS2Q8NFH8 660 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 MAP3K20Q9NYL2 800 aaKnown RBP17.49■□□□□ 0.39
LSM6-201ENST00000296581 DACH1Q9UI36 760 aa17.49■□□□□ 0.39
LSM6-201ENST00000296581 SLC26A4O43511 780 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 NF2P35240 595 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 CT47A1Q5JQC4 288 aaPredicted RBP17.48■□□□□ 0.39
LSM6-201ENST00000296581 FAM20AQ96MK3 541 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 PNMA5Q96PV4 448 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 PLIN2Q99541 437 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 BLZF1Q9H2G9 400 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 MYPNQ86TC9 1320 aa17.48■□□□□ 0.39
LSM6-201ENST00000296581 IGLV3-22A0A075B6J6 115 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 NFIBO00712 420 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 KIF20AO95235 890 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 ALAS1P13196 640 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 OAZ1P54368 228 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 COG2Q14746 738 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 HS1BP3Q53T59 392 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 KRT79Q5XKE5 535 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 GJA10Q969M2 543 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 STK17AQ9UEE5 414 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 CTDP1Q9Y5B0 961 aaPredicted RBP17.47■□□□□ 0.39
LSM6-201ENST00000296581 LOC285556D6RIA3 1793 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 TMEM119Q4V9L6 283 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 PLA2G4DQ86XP0 818 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 SNX29Q8TEQ0 813 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 WNK4Q96J92 1243 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 RABGAP1Q9Y3P9 1069 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 RPTORQ8N122 1335 aa17.47■□□□□ 0.39
LSM6-201ENST00000296581 MYL5Q02045 173 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 SPIRE1Q08AE8 756 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 MUM1L1Q5H9M0 696 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 HYIQ5T013 277 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 PNMA8AQ86V59 439 aaPredicted RBP17.46■□□□□ 0.39
LSM6-201ENST00000296581 NUDT12Q9BQG2 462 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 MSH4O15457 936 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 RPN1P04843 607 aaKnown RBP17.46■□□□□ 0.39
LSM6-201ENST00000296581 ZNF76P36508 570 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 ZNF75DP51815 510 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 PPATQ06203 517 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 SEMA3FQ13275 785 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 ANKRD13AQ8IZ07 590 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 BLOC1S4Q9NUP1 217 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 RMND1Q9NWS8 449 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 COL20A1Q9P218 1284 aa17.46■□□□□ 0.39
LSM6-201ENST00000296581 ATP2A1O14983 1001 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 ERCC5P28715 1186 aaPredicted RBP17.45■□□□□ 0.38
LSM6-201ENST00000296581 CYP2W1Q8TAV3 490 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 GTPBP4Q9BZE4 634 aaKnown RBP17.45■□□□□ 0.38
LSM6-201ENST00000296581 TRIM5Q9C035 493 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 HSD3B7Q9H2F3 369 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 TPM4P67936 248 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 KCNB1Q14721 858 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 EAPPQ56P03 285 aaPredicted RBP17.45■□□□□ 0.38
LSM6-201ENST00000296581 SYTL5Q8TDW5 730 aaPredicted RBP17.45■□□□□ 0.38
LSM6-201ENST00000296581 CNKSR2Q8WXI2 1034 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 CDK5RAP3Q96JB5 506 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 C7orf25Q9BPX7 421 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 ZNF214Q9UL59 606 aaPredicted RBP17.45■□□□□ 0.38
LSM6-201ENST00000296581 FRMPD4Q14CM0 1322 aa17.45■□□□□ 0.38
LSM6-201ENST00000296581 KLRC4O43908 158 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 ERO1BQ86YB8 467 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 TRERF1Q96PN7 1200 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 HOXC10Q9NYD6 342 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 KDM3AQ9Y4C1 1321 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 A0A0G2JMZ2 1700 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 SPDYE5A6NIY4 337 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 SPDYE16A6NNV3 312 aaPredicted RBP17.44■□□□□ 0.38
LSM6-201ENST00000296581 CEP55Q53EZ4 464 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.44■□□□□ 0.38
LSM6-201ENST00000296581 ENOX1Q8TC92 643 aaKnown RBP17.44■□□□□ 0.38
LSM6-201ENST00000296581 TRIM9Q9C026 710 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 NT5C3AQ9H0P0 336 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 ELP3Q9H9T3 547 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 HOMER2Q9NSB8 354 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 VAV3Q9UKW4 847 aa17.44■□□□□ 0.38
LSM6-201ENST00000296581 PPP1R3GB7ZBB8 358 aa17.43■□□□□ 0.38
LSM6-201ENST00000296581 MEIS1O00470 390 aa17.43■□□□□ 0.38
LSM6-201ENST00000296581 AMPD3Q01432 767 aa17.43■□□□□ 0.38
LSM6-201ENST00000296581 FMR1Q06787 632 aaKnown RBP eCLIP17.43■□□□□ 0.38
LSM6-201ENST00000296581 ECM1Q16610 540 aa17.43■□□□□ 0.38
LSM6-201ENST00000296581 ZNF658Q5TYW1 1059 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms