RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 EFHD1Q9BUP0 239 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CARD10Q9BWT7 1032 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 PCDHA5Q9Y5H7 936 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 AGLP35573 1532 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 COPB1P53618 953 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CCDC92Q53HC0 331 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 GPCPD1Q9NPB8 672 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 STK36Q9NRP7 1315 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 OR52Z1P0C646 297 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 LMNB2Q03252 620 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 DEUP1Q05D60 604 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 CEP70Q8NHQ1 597 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 SH2D4AQ9H788 454 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 LIFRP42702 1097 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 RETREG2Q8NC44 543 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 USP6NLQ92738 828 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 CNOT10Q9H9A5 744 aaKnown RBP10.72□□□□□ -0.69
COL6A3-201ENST00000295550 IFT122Q9HBG6 1241 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 RAB20Q9NX57 234 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 GGA1Q9UJY5 639 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 FMN2Q9NZ56 1722 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 HNRNPCL2B2RXH8 293 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 HNRNPCL1O60812 293 aaKnown RBP10.72□□□□□ -0.69
COL6A3-201ENST00000295550 TSGA10IPQ3SY00 556 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 CAPN12Q6ZSI9 719 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 TRIM50Q86XT4 487 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 APBA1Q02410 837 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 NBPF3Q9H094 633 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 GSTA4O15217 222 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 SEPT2Q15019 361 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 MAN1B1Q9UKM7 699 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 SLIT1O75093 1534 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 SPATA31D1Q6ZQQ2 1576 aa10.72□□□□□ -0.69
COL6A3-201ENST00000295550 SEMA3EO15041 775 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 SLFN14P0C7P3 912 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 GUCY2DQ02846 1103 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 ZFXP17010 805 aaPredicted RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 HOXA7P31268 230 aaPredicted RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 PHKA1P46020 1223 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 PTPROQ16827 1216 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 ADAT2Q7Z6V5 191 aaKnown RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 CCDC138Q96M89 665 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 OSBPL5Q9H0X9 879 aaPredicted RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 GREM2Q9H772 168 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 ARHGEF9O43307 516 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 SAT1P21673 171 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 KCNA4P22459 653 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 BCAMP50895 628 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 PTGDRQ13258 359 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 TBC1D22AQ8WUA7 517 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 DHTKD1Q96HY7 919 aaPredicted RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 OVOS2A0A0G2JMS6 1433 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 CNTRLQ7Z7A1 2325 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 PALLDQ8WX93 1383 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 IFNAR2P48551 515 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 KRT80Q6KB66 452 aa10.71□□□□□ -0.69
COL6A3-201ENST00000295550 PUS3Q9BZE2 481 aaKnown RBP10.71□□□□□ -0.69
COL6A3-201ENST00000295550 P4HA1P13674 534 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 ABCB4P21439 1286 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 YWHAEP62258 255 aaKnown RBP10.71□□□□□ -0.7
COL6A3-201ENST00000295550 MYCT1Q8N699 235 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 DHX40Q8IX18 779 aaKnown RBP10.71□□□□□ -0.7
COL6A3-201ENST00000295550 TEKT1Q969V4 418 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 EXOC3O60645 756 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 ATP6V1E1P36543 226 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 GOLPH3LQ9H4A5 285 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 SMYD2Q9NRG4 433 aa10.71□□□□□ -0.7
COL6A3-201ENST00000295550 S100BP04271 92 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 ECE1P42892 770 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 RCAN1P53805 252 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 ENOX1Q8TC92 643 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 CEP19Q96LK0 163 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 INTS9Q9NV88 658 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 SMCO2A6NFE2 343 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 XRCC5P13010 732 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 IFNAR1P17181 557 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 HERC4Q5GLZ8 1057 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 TRAPPC3LQ5T215 181 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 FBXO38Q6PIJ6 1188 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 CLCN6P51797 869 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 TFAP4Q01664 338 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 RBL2Q08999 1139 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 CMTR1Q8N1G2 835 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 EPN1Q9Y6I3 576 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 FAM47AQ5JRC9 791 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 AK8Q96MA6 479 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 GPKOWQ92917 476 aaPredicted RBP eCLIP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF622Q969S3 477 aaKnown RBP eCLIP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 DNM3Q9UQ16 869 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 CCDC151A5D8V7 595 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 hCG_1984214I3L0E3 225 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 TCP1P17987 556 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 KIF22Q14807 665 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF713Q8N859 430 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 STAMQ92783 540 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 OSBP2Q969R2 916 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 SPC25Q9HBM1 224 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 PCDHA4Q9UN74 947 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 GNGT2O14610 69 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 ASPHQ12797 758 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms