RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PRKAG2Q9UGJ0 569 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 COBLO75128 1261 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 PCK1P35558 622 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 MYL7Q01449 175 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 PTPN12Q05209 780 aaKnown RBP20.85■□□□□ 0.93
UPF1-201ENST00000262803 SCYL2Q6P3W7 929 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 TRIM42Q8IWZ5 723 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 OSBP2Q969R2 916 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 LRFN2Q9ULH4 789 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 NUB1Q9Y5A7 615 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 ADCY8P40145 1251 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 GOLGA8FQ08AF8 430 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 GOLGA8DPQ0D2H9 430 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 BFSP1Q12934 665 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 LRCH2Q5VUJ6 765 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 RTKN2Q8IZC4 609 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 EEF1GP26641 437 aaKnown RBP20.84■□□□□ 0.93
UPF1-201ENST00000262803 NECTIN1Q15223 517 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 SLC35F6Q8N357 371 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 RNF169Q8NCN4 708 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 PI4K2BQ8TCG2 481 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 LCMT1Q9UIC8 334 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 CCHCR1Q8TD31 782 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 ANO3Q9BYT9 981 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 ANAPC5Q9UJX4 755 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 PNMA3Q9UL41 463 aa20.84■□□□□ 0.93
UPF1-201ENST00000262803 ATF2P15336 505 aa20.83■□□□□ 0.93
UPF1-201ENST00000262803 PI16Q6UXB8 463 aa20.83■□□□□ 0.93
UPF1-201ENST00000262803 POMGNT1Q8WZA1 660 aa20.83■□□□□ 0.93
UPF1-201ENST00000262803 SASH1O94885 1247 aa20.83■□□□□ 0.93
UPF1-201ENST00000262803 PSMC2P35998 433 aaKnown RBP20.83■□□□□ 0.93
UPF1-201ENST00000262803 IREB2P48200 963 aaKnown RBP20.83■□□□□ 0.93
UPF1-201ENST00000262803 CEP120Q8N960 986 aa20.83■□□□□ 0.93
UPF1-201ENST00000262803 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.83■□□□□ 0.931e-7■■■■■ 75.8
UPF1-201ENST00000262803 RAB44Q7Z6P3 723 aaPredicted RBP20.83■□□□□ 0.92
UPF1-201ENST00000262803 SUGCTQ9HAC7 445 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 MED4Q9NPJ6 270 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 ZBTB1Q9Y2K1 713 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 PTCH1Q13635 1447 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 BUB1BO60566 1050 aaPredicted RBP20.83■□□□□ 0.92
UPF1-201ENST00000262803 HSPA8P11142 646 aaKnown RBP20.83■□□□□ 0.92
UPF1-201ENST00000262803 RESTQ13127 1097 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 PHLDB3Q6NSJ2 640 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 SMYD4Q8IYR2 804 aaPredicted RBP20.83■□□□□ 0.92
UPF1-201ENST00000262803 RILPQ96NA2 401 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 SPZ1Q9BXG8 430 aa20.83■□□□□ 0.92
UPF1-201ENST00000262803 HSPA6P17066 643 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 XPAP23025 273 aaPredicted RBP20.82■□□□□ 0.92
UPF1-201ENST00000262803 EFCAB13Q8IY85 973 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 ANKRD42Q8N9B4 389 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 MGARPQ8TDB4 240 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 PUS7LQ9H0K6 701 aaKnown RBP20.82■□□□□ 0.92
UPF1-201ENST00000262803 KLHL14Q9P2G3 628 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 FAN1Q9Y2M0 1017 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 SAMD9LQ8IVG5 1584 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 RXRBP28702 533 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 EXOC3L4Q17RC7 722 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 ATP1A2P50993 1020 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 SCNN1DP51172 638 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 DPH5Q9H2P9 285 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 QTRT2Q9H974 415 aaKnown RBP20.82■□□□□ 0.92
UPF1-201ENST00000262803 PTPN21Q16825 1174 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 ZNF577Q9BSK1 485 aa20.82■□□□□ 0.92
UPF1-201ENST00000262803 SLFN14P0C7P3 912 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 NR5A1Q13285 461 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 RASGRP4Q8TDF6 673 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 SNX25Q9H3E2 840 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 ZSCAN20P17040 1043 aaPredicted RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 PSMD2Q13200 908 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 DOK7Q18PE1 504 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 C10orf76Q5T2E6 689 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 GRAMD1CQ8IYS0 662 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 PRDM15P57071 1507 aaPredicted RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 SPDYE16A6NNV3 312 aaPredicted RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 IFNB1P01574 187 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 MMP1P03956 469 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 SERPINB2P05120 415 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 IFNAR1P17181 557 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 SPDYE2Q495Y8 402 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 TMEM94Q12767 1356 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 PRR36Q9H6K5 1346 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 SH2B2O14492 632 aaPredicted RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 ITKQ08881 620 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 RBL2Q08999 1139 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 FAM71BQ8TC56 605 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 MIPOL1Q8TD10 442 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 LARP4BQ92615 738 aaKnown RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 Q9H521 79 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 PDE11AQ9HCR9 933 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 DONSONQ9NYP3 566 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 BAG5Q9UL15 447 aa20.81■□□□□ 0.92
UPF1-201ENST00000262803 CDK12Q9NYV4 1490 aaPredicted RBP20.81■□□□□ 0.92
UPF1-201ENST00000262803 PPM1KQ8N3J5 372 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 CYP4A11Q02928 519 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 GJA10Q969M2 543 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 MAN1B1Q9UKM7 699 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 MYO3BQ8WXR4 1341 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 ENC1O14682 589 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 HNRNPDLO14979 420 aaKnown RBP20.8■□□□□ 0.92
UPF1-201ENST00000262803 RNASELQ05823 741 aaKnown RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms