RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 HNRNPH3P31942 346 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 USP14P54578 494 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 TUBB2AQ13885 445 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 EZH2Q15910 746 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 MICALL1Q8N3F8 863 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 DNAJC19Q96DA6 116 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 TUBB2BQ9BVA1 445 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 JMJD4Q9H9V9 463 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 FAM207AQ9NSI2 230 aaPredicted RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 LCMT1Q9UIC8 334 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 PLAGL2Q9UPG8 496 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 NT5C2P49902 561 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 PICALMQ13492 652 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 FNBP4Q8N3X1 1017 aaPredicted RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 COG1Q8WTW3 980 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 HDAC7Q8WUI4 952 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 EHD2Q9NZN4 543 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 FAN1Q9Y2M0 1017 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 SAR1BQ9Y6B6 198 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 A0A1W2PQJ5 194 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 SYF2O95926 243 aaKnown RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 GNA11P29992 359 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 KCNMA1Q12791 1236 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 STIM1Q13586 685 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 CALCRLQ16602 461 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 TMEM119Q4V9L6 283 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 ZCWPW2Q504Y3 356 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 FIGNQ5HY92 759 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 CREG2Q8IUH2 290 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 LARP4BQ92615 738 aaKnown RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 KANSL2Q9H9L4 492 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 SMARCA1P28370 1054 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 SLC16A2P36021 539 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 MTIF2P46199 727 aaKnown RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 IRX3P78415 501 aaPredicted RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 ENOX2Q16206 610 aaKnown RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 ASTE1Q2TB18 679 aaPredicted RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 VWA3BQ502W6 1294 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 HDXQ7Z353 690 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 NOC3LQ8WTT2 800 aaKnown RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 DDX12PQ92771 950 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 NDST4Q9H3R1 872 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 GPCPD1Q9NPB8 672 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 MAGEC2Q9UBF1 373 aaPredicted RBP11.25□□□□□ -0.61
COPB1-201ENST00000249923 PCDHAC2Q9Y5I4 1007 aa11.25□□□□□ -0.61
COPB1-201ENST00000249923 LRRC53A6NM62 1247 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 MYO1CO00159 1063 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 CDK17Q00537 523 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 HGSNATQ68CP4 663 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 DPP8Q6V1X1 898 aaPredicted RBP11.24□□□□□ -0.61
COPB1-201ENST00000249923 UNC13DQ70J99 1090 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 ZFPM1Q8IX07 1006 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 ADGRF4Q8IZF3 695 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 RIN2Q8WYP3 895 aaPredicted RBP11.24□□□□□ -0.61
COPB1-201ENST00000249923 RAD54LQ92698 747 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 DNAJC18Q9H819 358 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 SEC63Q9UGP8 760 aaKnown RBP11.24□□□□□ -0.61
COPB1-201ENST00000249923 GGA1Q9UJY5 639 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 TLR2O60603 784 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 NOL4O94818 638 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 LCA5LO95447 670 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 LDHCP07864 332 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 SHMT1P34896 483 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 C2orf54Q08AI8 447 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 SEMA3FQ13275 785 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 TSR1Q2NL82 804 aaKnown RBP11.24□□□□□ -0.61
COPB1-201ENST00000249923 FOXR1Q6PIV2 292 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 AMOTL1Q8IY63 956 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 MSL3Q8N5Y2 521 aaKnown RBP11.24□□□□□ -0.61
COPB1-201ENST00000249923 PCDHA2Q9Y5H9 948 aa11.24□□□□□ -0.61
COPB1-201ENST00000249923 BICDL2A1A5D9 508 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 F8W031 263 aaPredicted RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 VAV2P52735 878 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 C2CD5Q86YS7 1000 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 CCDC170Q8IYT3 715 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 RETREG2Q8NC44 543 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 SH2D4AQ9H788 454 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 NPHP3-ACAD11A0A0J9YXS1 232 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 AGPSO00116 658 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 ERLIN1O75477 346 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 PRPF6O94906 941 aaKnown RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 GTF2IP78347 998 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 CNNM4Q6P4Q7 775 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 SV2BQ7L1I2 683 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 RPGRQ92834 1020 aaKnown RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 ZNF646O15015 1829 aaPredicted RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 SMCHD1A6NHR9 2005 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 EIF3JO75822 258 aaKnown RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 MOCS3O95396 460 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 SERPINB2P05120 415 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 EIF4A3P38919 411 aaKnown RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 ADCY7P51828 1080 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 KIF11P52732 1056 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 CACNB1Q02641 598 aaPredicted RBP11.23□□□□□ -0.61
COPB1-201ENST00000249923 ZNF543Q08ER8 600 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 NFIAQ12857 509 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 TMC4Q7Z404 712 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 KIAA1328Q86T90 577 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 TSPYL1Q9H0U9 437 aa11.23□□□□□ -0.61
COPB1-201ENST00000249923 BCAS3Q9H6U6 928 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms