RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TRERF1Q96PN7 1200 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 ALS2CR12Q96Q35 445 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 RNF40O75150 1001 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 TNNI2P48788 182 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 DDX12PQ92771 950 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 FAM163AQ96GL9 167 aaPredicted RBP20.77■□□□□ 0.92
CPSF3-201ENST00000238112 FAM204AQ9H8W3 233 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 MTMR4Q9NYA4 1195 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 CAPN6Q9Y6Q1 641 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 LRRC53A6NM62 1247 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 IRX5P78411 483 aaPredicted RBP20.77■□□□□ 0.92
CPSF3-201ENST00000238112 PSMD2Q13200 908 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 LRRC47Q8N1G4 583 aaKnown RBP20.77■□□□□ 0.92
CPSF3-201ENST00000238112 DRC1Q96MC2 740 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 MLXIPQ9HAP2 919 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 RIC8AQ9NPQ8 531 aa20.77■□□□□ 0.92
CPSF3-201ENST00000238112 MOCS3O95396 460 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 IVLP07476 585 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 TBC1D22AQ8WUA7 517 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 CRACR2AQ9BSW2 395 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 TANGO6Q9C0B7 1094 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 LCA5LO95447 670 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 VPS72Q15906 364 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 CCNI2Q6ZMN8 369 aaPredicted RBP20.76■□□□□ 0.91
CPSF3-201ENST00000238112 LRRC55Q6ZSA7 311 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 CACNA2D4Q7Z3S7 1137 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 CREG2Q8IUH2 290 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 GPCPD1Q9NPB8 672 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 CDK5RAP2Q96SN8 1893 aa20.76■□□□□ 0.91
CPSF3-201ENST00000238112 GAKO14976 1311 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 SYF2O95926 243 aaKnown RBP20.75■□□□□ 0.91
CPSF3-201ENST00000238112 EIF6P56537 245 aaKnown RBP20.75■□□□□ 0.91
CPSF3-201ENST00000238112 TMEM119Q4V9L6 283 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 GDAP1L1Q96MZ0 367 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 NUDT12Q9BQG2 462 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 SELENOOQ9BVL4 669 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 PLIN4Q96Q06 1357 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 MARCH6O60337 910 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 PRLRP16471 622 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 LRRC41Q15345 812 aa20.75■□□□□ 0.91
CPSF3-201ENST00000238112 GSPT2Q8IYD1 628 aaKnown RBP20.75■□□□□ 0.91
CPSF3-201ENST00000238112 BTAF1O14981 1849 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 ERCC3P19447 782 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 MAGEA1P43355 309 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 PICALMQ13492 652 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 PRR5LQ6MZQ0 368 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 PPP1R18Q6NYC8 613 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 KCNK18Q7Z418 384 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 MYOCDQ8IZQ8 938 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 PROM2Q8N271 834 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 MMGT1Q8N4V1 131 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 AFAP1L1Q8TED9 768 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 C8orf37Q96NL8 207 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 HYOU1Q9Y4L1 999 aa20.74■□□□□ 0.91
CPSF3-201ENST00000238112 EDIL3O43854 480 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 TCP1P17987 556 aaKnown RBP20.73■□□□□ 0.91
CPSF3-201ENST00000238112 ITIH3Q06033 890 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 PPP4R3AQ6IN85 833 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 BAP1Q92560 729 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 NGLY1Q96IV0 654 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 DDX25Q9UHL0 483 aaKnown RBP20.73■□□□□ 0.91
CPSF3-201ENST00000238112 PNMA6FA0A0J9YX94 578 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 MYBL2P10244 700 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 EHHADHQ08426 723 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 UBE2SQ16763 222 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 CCDC181Q5TID7 509 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 PDXDC1Q6P996 788 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 FOXR2Q6PJQ5 311 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 DPP8Q6V1X1 898 aaPredicted RBP20.73■□□□□ 0.91
CPSF3-201ENST00000238112 ZNF572Q7Z3I7 529 aaPredicted RBP20.73■□□□□ 0.91
CPSF3-201ENST00000238112 GPIHBP1Q8IV16 184 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 OSBPL9Q96SU4 736 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 EDEM3Q9BZQ6 932 aa20.73■□□□□ 0.91
CPSF3-201ENST00000238112 RPS6KA5O75582 802 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 SNHG28P0DPA3 235 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 AKR1B1P15121 316 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 ATP2B2Q01814 1243 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 SEPT2Q15019 361 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 CCDC40Q4G0X9 1142 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 GLIS3Q8NEA6 775 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 RBM17Q96I25 401 aaKnown RBP20.72■□□□□ 0.91
CPSF3-201ENST00000238112 TSPYL1Q9H0U9 437 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 FAM184BQ9ULE4 1060 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 COL4A3BPQ9Y5P4 624 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 FKBP3Q00688 224 aaKnown RBP20.72■□□□□ 0.91
CPSF3-201ENST00000238112 COASYQ13057 564 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 TDRD12Q587J7 1177 aaKnown RBP20.72■□□□□ 0.91
CPSF3-201ENST00000238112 NFRKBQ6P4R8 1299 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 FAM196AQ6ZSG2 479 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 SPATA4Q8NEY3 305 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 RUBCNQ92622 972 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 CUL5Q93034 780 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 BMP2KQ9NSY1 1161 aaPredicted RBP20.72■□□□□ 0.91
CPSF3-201ENST00000238112 DAGLAQ9Y4D2 1042 aa20.72■□□□□ 0.91
CPSF3-201ENST00000238112 PRPF6O94906 941 aaKnown RBP20.71■□□□□ 0.91
CPSF3-201ENST00000238112 TTLL1O95922 423 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 FAM182BQ5T319 152 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 ADGRF4Q8IZF3 695 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 JMJD4Q9H9V9 463 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 SSU72P8A0A1W2PR75 194 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms