RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 ZWINTO95229 277 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 EIF4A3P38919 411 aaKnown RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 ACCSLQ4AC99 568 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 MRRFQ96E11 262 aaKnown RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 NLRC4Q9NPP4 1024 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 IQGAP2Q13576 1575 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 GAS8O95995 478 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 S100BP04271 92 aaPredicted RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 RPN1P04843 607 aaKnown RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 RBM12BQ8IXT5 1001 aaKnown RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 SYT2Q8N9I0 419 aaPredicted RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 UBXN6Q9BZV1 441 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 PARVBQ9HBI1 364 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 TMOD2Q9NZR1 351 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 PPP1R1BQ9UD71 204 aaPredicted RBP13.98□□□□□ -0.17
VAMP4-201ENST00000236192 ARHGEF11O15085 1522 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 LAMC3Q9Y6N6 1575 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 AGTP01019 485 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 TTC38Q5R3I4 469 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 PRM3Q9NNZ6 103 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 LRCH1Q9Y2L9 728 aa13.98□□□□□ -0.17
VAMP4-201ENST00000236192 ESRRBO95718 433 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 STMN1P16949 149 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 LMNB1P20700 586 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 PMS2P54278 862 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TPD52P55327 224 aaPredicted RBP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 BLMHQ13867 455 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 LRRC43Q8N309 656 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 RBBP8NLQ8NC74 664 aaPredicted RBP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 ENGASEQ8NFI3 743 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 PI4K2BQ8TCG2 481 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 CUEDC2Q9H467 287 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 BTBD7Q9P203 1132 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 MARK3P27448 753 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 GRAMD1BQ3KR37 738 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 SMYD4Q8IYR2 804 aaPredicted RBP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 GRAMD1CQ8IYS0 662 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 AENQ8WTP8 325 aaKnown RBP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 CSRNP2Q9H175 543 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 THAP9Q9H5L6 903 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TUBE1Q9UJT0 475 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 MINDY4BA8MYZ0 360 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TCP11X1B4DZS4 312 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TRAF5O00463 557 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 ADARP55265 1226 aaKnown RBP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TMEM259Q4ZIN3 620 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.97□□□□□ -0.17
VAMP4-201ENST00000236192 RTL9Q8NET4 1388 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 ASAP2O43150 1006 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 GALNT8Q9NY28 637 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 CHPF2Q9P2E5 772 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 TCEAL9Q9UHQ7 104 aa13.97□□□□□ -0.17
VAMP4-201ENST00000236192 SPOPO43791 374 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 CALML3P27482 149 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 USP4Q13107 963 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 UAP1Q16222 522 aaPredicted RBP13.96□□□□□ -0.17
VAMP4-201ENST00000236192 ZNF658Q5TYW1 1059 aaPredicted RBP13.96□□□□□ -0.17
VAMP4-201ENST00000236192 TMTC3Q6ZXV5 915 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 OTUD6AQ7L8S5 288 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 GALNT15Q8N3T1 639 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 OPLAHO14841 1288 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 COBLO75128 1261 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 RASSF3Q86WH2 238 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 NDNQ99608 321 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 AP1M1Q9BXS5 423 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 MLXIPQ9HAP2 919 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 ATP9AO75110 1047 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 DR1Q01658 176 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 R3HDM1Q15032 1099 aaKnown RBP13.96□□□□□ -0.17
VAMP4-201ENST00000236192 ICA1LQ8NDH6 482 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 NLRP7Q8WX94 980 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 FAM81BQ96LP2 452 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 PLIN2Q99541 437 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 ANLNQ9NQW6 1124 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 SNRKQ9NRH2 765 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 SYNJ2O15056 1496 aa13.96□□□□□ -0.17
VAMP4-201ENST00000236192 DENND4BO75064 1496 aaPredicted RBP13.96□□□□□ -0.17
VAMP4-201ENST00000236192 RANBP6O60518 1105 aaKnown RBP13.96□□□□□ -0.18
VAMP4-201ENST00000236192 PAPD7Q5XG87 772 aaKnown RBP13.96□□□□□ -0.18
VAMP4-201ENST00000236192 ZNF530Q6P9A1 599 aaPredicted RBP13.96□□□□□ -0.18
VAMP4-201ENST00000236192 NT5C3AQ9H0P0 336 aa13.96□□□□□ -0.18
VAMP4-201ENST00000236192 DCLRE1BQ9H816 532 aa13.96□□□□□ -0.18
VAMP4-201ENST00000236192 USP40Q9NVE5 1235 aa13.96□□□□□ -0.18
VAMP4-201ENST00000236192 RASSF9O75901 435 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 SMNDC1O75940 238 aaKnown RBP eCLIP13.95□□□□□ -0.18
VAMP4-201ENST00000236192 HSPA1LP34931 641 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 FAM186BQ8IYM0 893 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 CNBD1Q8NA66 436 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 ATP11CQ8NB49 1132 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 CNOT6LQ96LI5 555 aaKnown RBP13.95□□□□□ -0.18
VAMP4-201ENST00000236192 NDEL1Q9GZM8 345 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 ANKIB1Q9P2G1 1089 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 MAGI1Q96QZ7 1491 aaPredicted RBP13.95□□□□□ -0.18
VAMP4-201ENST00000236192 TNFAIP3P21580 790 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 LMNB2Q03252 620 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 RINLQ6ZS11 566 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 FAM47EQ6ZV65 393 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 SV2BQ7L1I2 683 aa13.95□□□□□ -0.18
VAMP4-201ENST00000236192 RPS6KC1Q96S38 1066 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms