RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C TFB5Q3E7C1 72 aaPredicted RBP3.18□□□□□ -1.9
LCB4YOR171C SKI3P17883 1432 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C CFT1Q06632 1357 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C YPR089WO13585 888 aa3.18□□□□□ -1.9
LCB4YOR171C LPD1P09624 499 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C SRV2P17555 526 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C UTR1P21373 530 aa3.18□□□□□ -1.9
LCB4YOR171C VPS34P22543 875 aa3.18□□□□□ -1.9
LCB4YOR171C DPB2P24482 689 aaPredicted RBP3.18□□□□□ -1.9
LCB4YOR171C PRE2P30656 287 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C MRP20P32387 263 aa3.18□□□□□ -1.9
LCB4YOR171C NUF2P33895 451 aa3.18□□□□□ -1.9
LCB4YOR171C YMC2P38087 329 aa3.18□□□□□ -1.9
LCB4YOR171C GDT1P38301 280 aaPredicted RBP3.18□□□□□ -1.9
LCB4YOR171C YHR045WP38775 560 aa3.18□□□□□ -1.9
LCB4YOR171C PET100P38958 111 aa3.18□□□□□ -1.9
LCB4YOR171C SUR2P38992 349 aa3.18□□□□□ -1.9
LCB4YOR171C AFG3P39925 761 aa3.18□□□□□ -1.9
LCB4YOR171C VFA1P40080 203 aa3.18□□□□□ -1.9
LCB4YOR171C ELP2P42935 788 aa3.18□□□□□ -1.9
LCB4YOR171C HAM1P47119 197 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C HEF3P53978 1044 aaKnown RBP3.18□□□□□ -1.9
LCB4YOR171C SOV1Q04748 898 aa3.18□□□□□ -1.9
LCB4YOR171C IRC10Q08118 586 aa3.18□□□□□ -1.9
LCB4YOR171C YDL109CQ12103 647 aa3.18□□□□□ -1.9
LCB4YOR171C YDR061WQ12298 539 aa3.18□□□□□ -1.9
LCB4YOR171C YLR302CO13544 120 aa3.17□□□□□ -1.9
LCB4YOR171C SSA3P09435 649 aaKnown RBP3.17□□□□□ -1.9
LCB4YOR171C TCP1P12612 559 aaKnown RBP3.17□□□□□ -1.9
LCB4YOR171C SEC62P21825 274 aa3.17□□□□□ -1.9
LCB4YOR171C ATP11P32453 318 aa3.17□□□□□ -1.9
LCB4YOR171C EMP70P32802 667 aa3.17□□□□□ -1.9
LCB4YOR171C UBC6P33296 250 aaPredicted RBP3.17□□□□□ -1.9
LCB4YOR171C YBL055CP34220 418 aaPredicted RBP3.17□□□□□ -1.9
LCB4YOR171C PTK1P36002 662 aaPredicted RBP3.17□□□□□ -1.9
LCB4YOR171C CHK1P38147 527 aa3.17□□□□□ -1.9
LCB4YOR171C CST26P38226 397 aa3.17□□□□□ -1.9
LCB4YOR171C VID24P38263 362 aa3.17□□□□□ -1.9
LCB4YOR171C SHC1P39000 512 aa3.17□□□□□ -1.9
LCB4YOR171C PCL6P40038 420 aa3.17□□□□□ -1.9
LCB4YOR171C SLZ1P40167 298 aa3.17□□□□□ -1.9
LCB4YOR171C RSM25P40496 264 aa3.17□□□□□ -1.9
LCB4YOR171C GTO1P48239 356 aa3.17□□□□□ -1.9
LCB4YOR171C BIO3P50277 480 aa3.17□□□□□ -1.9
LCB4YOR171C VPS73P53142 486 aaKnown RBP3.17□□□□□ -1.9
LCB4YOR171C SPO19Q03029 223 aa3.17□□□□□ -1.9
LCB4YOR171C SRL4Q03085 281 aa3.17□□□□□ -1.9
LCB4YOR171C GFD1Q04839 188 aaKnown RBP3.17□□□□□ -1.9
LCB4YOR171C SMC5Q08204 1093 aa3.17□□□□□ -1.9
LCB4YOR171C UAF30Q08747 228 aa3.17□□□□□ -1.9
LCB4YOR171C YPL216WQ08964 1102 aa3.17□□□□□ -1.9
LCB4YOR171C GET4Q12125 312 aa3.17□□□□□ -1.9
LCB4YOR171C MSL5Q12186 476 aaKnown RBP RIP-Chip data3.17□□□□□ -1.9not detected
LCB4YOR171C COX17Q12287 69 aa3.17□□□□□ -1.9
LCB4YOR171C NBL1Q3E7Y6 73 aa3.17□□□□□ -1.9
LCB4YOR171C SAM1P10659 382 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C CDC43P18898 376 aa3.16□□□□□ -1.9
LCB4YOR171C KGD1P20967 1014 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C RIT1P23796 513 aa3.16□□□□□ -1.9
LCB4YOR171C RVS161P25343 265 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C FAA1P30624 700 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C MCM4P30665 933 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C YME1P32795 747 aa3.16□□□□□ -1.9
LCB4YOR171C CYM1P32898 989 aa3.16□□□□□ -1.9
LCB4YOR171C YPT10P38146 199 aa3.16□□□□□ -1.9
LCB4YOR171C RRT2P38332 387 aa3.16□□□□□ -1.9
LCB4YOR171C YMR262WP38430 313 aa3.16□□□□□ -1.9
LCB4YOR171C DOT5P40553 215 aa3.16□□□□□ -1.9
LCB4YOR171C GCD14P46959 383 aaPredicted RBP3.16□□□□□ -1.9
LCB4YOR171C GLO1P50107 326 aa3.16□□□□□ -1.9
LCB4YOR171C KAP114P53067 1004 aa3.16□□□□□ -1.9
LCB4YOR171C MND1P53102 219 aa3.16□□□□□ -1.9
LCB4YOR171C PRM1P53835 661 aa3.16□□□□□ -1.9
LCB4YOR171C RPA49Q01080 415 aaPredicted RBP3.16□□□□□ -1.9
LCB4YOR171C NGL2Q03264 515 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C VPS60Q03390 229 aa3.16□□□□□ -1.9
LCB4YOR171C VPS64Q03944 604 aa3.16□□□□□ -1.9
LCB4YOR171C URH1Q04179 340 aa3.16□□□□□ -1.9
LCB4YOR171C ARG7Q04728 441 aa3.16□□□□□ -1.9
LCB4YOR171C SUT2Q12286 268 aa3.16□□□□□ -1.9
LCB4YOR171C YOS9Q99220 542 aa3.16□□□□□ -1.9
LCB4YOR171C TPK2P06245 380 aa3.16□□□□□ -1.9
LCB4YOR171C UGA1P17649 471 aa3.16□□□□□ -1.9
LCB4YOR171C SPE2P21182 396 aa3.16□□□□□ -1.9
LCB4YOR171C YCR061WP25639 631 aa3.16□□□□□ -1.9
LCB4YOR171C CDC5P32562 705 aa3.16□□□□□ -1.9
LCB4YOR171C GEX2P36173 615 aa3.16□□□□□ -1.9
LCB4YOR171C MRPL10P36520 322 aa3.16□□□□□ -1.9
LCB4YOR171C THI2P38141 450 aa3.16□□□□□ -1.9
LCB4YOR171C KAP104P38217 918 aaKnown RBP3.16□□□□□ -1.9
LCB4YOR171C REG2P38232 338 aa3.16□□□□□ -1.9
LCB4YOR171C TDP1P38319 544 aa3.16□□□□□ -1.9
LCB4YOR171C SDH8P38345 138 aa3.16□□□□□ -1.9
LCB4YOR171C ERC1P38767 581 aa3.16□□□□□ -1.9
LCB4YOR171C IDS2P46958 469 aa3.16□□□□□ -1.9
LCB4YOR171C SNX4P47057 423 aa3.16□□□□□ -1.9
LCB4YOR171C BRO1P48582 844 aa3.16□□□□□ -1.9
LCB4YOR171C IMA1P53051 589 aa3.16□□□□□ -1.9
LCB4YOR171C YGL185CP53100 379 aa3.16□□□□□ -1.9
LCB4YOR171C SLX9P53251 210 aaPredicted RBP3.16□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms