RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	KIN3	P22209	435 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	VPS34	P22543	875 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	TKL1	P23254	680 aa	Known RBP	4.55	□□□□□ -1.68
EAR1	YMR171C	UTR4	P32626	227 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	MRP4	P32902	394 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	YKR015C	P36111	568 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	MAM33	P40513	266 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	CHS6	P40955	746 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	TRF5	P48561	642 aa	Known RBP	4.55	□□□□□ -1.68
EAR1	YMR171C	MND1	P53102	219 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	YGR117C	P53270	476 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	COG2	P53271	262 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	BUD17	P53727	317 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	ARO80	Q04052	950 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	ECM7	Q06200	448 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	AAD15	Q08361	143 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	MRH1	Q12117	320 aa	Predicted RBP	4.55	□□□□□ -1.68
EAR1	YMR171C	GET4	Q12125	312 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	MDM20	Q12387	796 aa	Known RBP	4.55	□□□□□ -1.68
EAR1	YMR171C	CSR2	Q12734	1121 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	YLR278C	Q05854	1341 aa		4.55	□□□□□ -1.68
EAR1	YMR171C	ASP3-2	P0CX77	362 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ASP3-3	P0CX78	362 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ASP3-4	P0CX79	362 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ASP3-1	P0CZ17	362 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	YPK1	P12688	680 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	VMA2	P16140	517 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	PRE2	P30656	287 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	TFC1	P32367	649 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	PHA2	P32452	334 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	NPL6	P32832	435 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	CYM1	P32898	989 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	SRB2	P34162	210 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	SIP2	P34164	415 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	MTH1	P35198	433 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	RIM2	P38127	377 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	PHO89	P38361	574 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ERP2	P39704	215 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	CAB2	P40506	365 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	SAD1	P43589	448 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	YDR179W-A	Q03983	463 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	EMP46	Q12396	444 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	RGS2	Q99188	309 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ATR1	P13090	542 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	CNE1	P27825	502 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ZIP1	P31111	875 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	RIM1	P32445	135 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	EXO84	P38261	753 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	OTU2	P38747	307 aa	Known RBP	4.54	□□□□□ -1.68
EAR1	YMR171C	BZZ1	P38822	633 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	MIT1	P40002	666 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	PUG1	P40100	303 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	YJR054W	P47114	497 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	SHE4	P51534	789 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	YMR209C	Q03648	457 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	ERP3	Q12403	225 aa		4.54	□□□□□ -1.68
EAR1	YMR171C	BET2	P20133	325 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	DPB2	P24482	689 aa	Predicted RBP	4.53	□□□□□ -1.68
EAR1	YMR171C	SEC66	P33754	206 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	SLM4	P38247	162 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	FES1	P38260	290 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	YDR089W	P38966	869 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	AIM20	P40451	204 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	IDS2	P46958	469 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	IML2	P47031	731 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	MNP1	P53163	194 aa	Predicted RBP	4.53	□□□□□ -1.68
EAR1	YMR171C	YPR003C	P53394	754 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	ARC35	P53731	342 aa	Known RBP	4.53	□□□□□ -1.68
EAR1	YMR171C	NGL2	Q03264	515 aa	Known RBP	4.53	□□□□□ -1.68
EAR1	YMR171C	CWC21	Q03375	135 aa	Known RBP	4.53	□□□□□ -1.68
EAR1	YMR171C	SPC2	Q04969	178 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	BLS1	Q06071	122 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	ATG26	Q06321	1198 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	NSE1	Q07913	336 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	ICL2	Q12031	575 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	MSH5	Q12175	901 aa		4.53	□□□□□ -1.68
EAR1	YMR171C	MIS1	P09440	975 aa	Known RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
EAR1	YMR171C	NCP1	P16603	691 aa	Known RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	CDC43	P18898	376 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	SAN1	P22470	610 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	AMD2	P22580	549 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	CLB3	P24870	427 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	YBR138C	P38277	524 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	SNL1	P40548	159 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	AZR1	P50080	613 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	DCP2	P53550	970 aa	Known RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	CUS2	P53830	285 aa	Predicted RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	DSL1	P53847	754 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	ELP3	Q02908	557 aa	Known RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	SLD5	Q03406	294 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	MZM1	Q03429	123 aa	Predicted RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	YMR160W	Q03823	816 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	YMR226C	Q05016	267 aa	Known RBP	4.52	□□□□□ -1.69
EAR1	YMR171C	YDL073W	Q07454	984 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	THI20	Q08224	551 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	IZH4	Q99393	312 aa		4.52	□□□□□ -1.69
EAR1	YMR171C	CAR1	P00812	333 aa	Known RBP	4.51	□□□□□ -1.69
EAR1	YMR171C	ATP2	P00830	511 aa	Known RBP	4.51	□□□□□ -1.69
EAR1	YMR171C	RHO2	P06781	192 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms