RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	RPL31B	P0C2H9	113 aa	Known RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	RPL20A	P0CX23	172 aa	Known RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	RPL20B	P0CX24	172 aa	Predicted RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	GLK1	P17709	500 aa	Known RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	CMC1	P36064	111 aa		4.18	□□□□□ -1.74
RRI1	YDL216C	ESL1	P40456	1118 aa		4.18	□□□□□ -1.74
RRI1	YDL216C	RPR2	P40571	144 aa		4.18	□□□□□ -1.74
RRI1	YDL216C	YFR016C	P43597	1233 aa	Known RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	MRD1	Q06106	887 aa	Known RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	RIM20	Q12033	661 aa		4.18	□□□□□ -1.74
RRI1	YDL216C	CFT2	Q12102	859 aa	Predicted RBP	4.18	□□□□□ -1.74
RRI1	YDL216C	ATR1	P13090	542 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	MFT1	P33441	392 aa	Known RBP	4.17	□□□□□ -1.74
RRI1	YDL216C	SEC66	P33754	206 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	MTC4	P38335	694 aa	Known RBP	4.17	□□□□□ -1.74
RRI1	YDL216C	SHO1	P40073	367 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	NDE1	P40215	560 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	MET18	P40469	1032 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	COS10	P52924	374 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	JJJ1	P53863	590 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	SLG1	P54867	378 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	AYT1	Q12226	474 aa		4.17	□□□□□ -1.74
RRI1	YDL216C	GDH1	P07262	454 aa	Known RBP	4.16	□□□□□ -1.74
RRI1	YDL216C	PMU1	P36069	295 aa		4.16	□□□□□ -1.74
RRI1	YDL216C	YBP1	P38315	674 aa		4.16	□□□□□ -1.74
RRI1	YDL216C	ALG8	P40351	577 aa		4.16	□□□□□ -1.74
RRI1	YDL216C	IMP4	P53941	290 aa	Known RBP	4.16	□□□□□ -1.74
RRI1	YDL216C	KEL3	Q08979	651 aa	Predicted RBP	4.16	□□□□□ -1.74
RRI1	YDL216C	YML133C	Q03099	1374 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	YLL067C	Q07888	1374 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	YLL066C	Q99208	1374 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	MES1	P00958	751 aa	Known RBP	4.15	□□□□□ -1.75
RRI1	YDL216C	CKA1	P15790	372 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	MCK1	P21965	375 aa	Known RBP	4.15	□□□□□ -1.75
RRI1	YDL216C	ATS1	P31386	333 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	CBP4	P37267	147 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	HXT14	P42833	540 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	YJL132W	P47014	750 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	MRPL19	P53875	158 aa		4.15	□□□□□ -1.75
RRI1	YDL216C	RQC1	Q05468	723 aa	Known RBP	4.15	□□□□□ -1.75
RRI1	YDL216C	PRP16	P15938	1071 aa	Predicted RBP	4.14	□□□□□ -1.75
RRI1	YDL216C	CPR3	P25719	182 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	GPI10	P30777	616 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	TUL1	P36096	758 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	OTU2	P38747	307 aa	Known RBP	4.14	□□□□□ -1.75
RRI1	YDL216C	FAU1	P40099	211 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	POP1	P41812	875 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	GWT1	P47026	490 aa		4.14	□□□□□ -1.75
RRI1	YDL216C	OCA1	P50946	238 aa	Predicted RBP	4.14	□□□□□ -1.75
RRI1	YDL216C	RHO2	P06781	192 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	YCR022C	P25620	114 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	ATP11	P32453	318 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	PMT1	P33775	817 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	RSM22	P36056	628 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	HAT2	P39984	401 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	YGL108C	P53139	140 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	GRX6	Q12438	231 aa		4.13	□□□□□ -1.75
RRI1	YDL216C	INH1	P01097	85 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	HEM2	P05373	342 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	CDC31	P06704	161 aa	Known RBP	4.12	□□□□□ -1.75
RRI1	YDL216C	LPD1	P09624	499 aa	Known RBP	4.12	□□□□□ -1.75
RRI1	YDL216C	ROX1	P25042	368 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	PUT3	P25502	979 aa	Predicted RBP	4.12	□□□□□ -1.75
RRI1	YDL216C	BUB3	P26449	341 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	RAD14	P28519	371 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	AGA1	P32323	725 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	GYP6	P32806	458 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	YHR218W	P38899	603 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	SMF1	P38925	575 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	KRE9	P39005	276 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
RRI1	YDL216C	MDM1	Q01846	1127 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	TAP42	Q04372	366 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	SOV1	Q04748	898 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	SCW10	Q04951	389 aa		4.12	□□□□□ -1.75
RRI1	YDL216C	MET17	P06106	444 aa		4.11	□□□□□ -1.75
RRI1	YDL216C	LEU4	P06208	619 aa	Known RBP	4.11	□□□□□ -1.75
RRI1	YDL216C	REC114	P32841	428 aa		4.11	□□□□□ -1.75
RRI1	YDL216C	SYG1	P40528	902 aa		4.11	□□□□□ -1.75
RRI1	YDL216C	IDP2	P41939	412 aa		4.11	□□□□□ -1.75
RRI1	YDL216C	GIR2	Q03768	265 aa	Predicted RBP	4.11	□□□□□ -1.75
RRI1	YDL216C	RKM5	Q12367	367 aa		4.11	□□□□□ -1.75
RRI1	YDL216C	SPB1	P25582	841 aa	Predicted RBP	4.1	□□□□□ -1.75
RRI1	YDL216C	FUN19	P28003	413 aa	Predicted RBP	4.1	□□□□□ -1.75
RRI1	YDL216C	CRM1	P30822	1084 aa	Known RBP	4.1	□□□□□ -1.75
RRI1	YDL216C	AFG1	P32317	509 aa		4.1	□□□□□ -1.75
RRI1	YDL216C	SRB7	P47822	140 aa		4.1	□□□□□ -1.75
RRI1	YDL216C	RMD9	P53140	646 aa	Known RBP	4.1	□□□□□ -1.75
RRI1	YDL216C	OGG1	P53397	376 aa	Predicted RBP	4.1	□□□□□ -1.75
RRI1	YDL216C	TAF11	Q04226	346 aa		4.1	□□□□□ -1.75
RRI1	YDL216C	CTF3	Q12748	733 aa		4.1	□□□□□ -1.75
RRI1	YDL216C	SPS4	P09937	338 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	RED1	P14291	827 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	FRE2	P36033	711 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	JNM1	P36224	373 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	YMR147W	P40218	223 aa	Known RBP	4.09	□□□□□ -1.75
RRI1	YDL216C	YGR149W	P48236	432 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	NCS2	P53923	493 aa	Predicted RBP	4.09	□□□□□ -1.75
RRI1	YDL216C	VTA1	Q06263	330 aa		4.09	□□□□□ -1.75
RRI1	YDL216C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 34.4 ms