RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ENTPD3O75355 529 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 GYS1P13807 737 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 HSPA6P17066 643 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ATP6V1E1P36543 226 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PHKA1P46020 1223 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DPYDQ12882 1025 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 EIF2B5Q13144 721 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 KRT24Q2M2I5 525 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 TADA2BQ86TJ2 420 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 FSIP1Q8NA03 581 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 IQUBQ8NA54 791 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 MTUS1Q9ULD2 1270 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PDHXO00330 501 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 ATP2A1O14983 1001 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 STRNO43815 780 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 EFCAB14O75071 495 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PPFIA2O75334 1257 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 URODP06132 367 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 AK2P54819 239 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 C1QTNF8P60827 252 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 FAM83BQ5T0W9 1011 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 GALNT17Q6IS24 598 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 Q6ZUG5 572 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 DEFB118Q96PH6 123 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 LRRC2Q9BYS8 371 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 THG1LQ9NWX6 298 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 RRN3P2A6NIE6 340 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 CETN3O15182 167 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 BNIP3LO60238 219 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 YEATS4O95619 227 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 NCAPD2Q15021 1401 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 HLFQ16534 295 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 C7orf61Q8IZ16 206 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 DCAF4Q8WV16 495 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 COLEC11Q9BWP8 271 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 LRWD1Q9UFC0 647 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 KCNQ3O43525 872 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 KIF5CO60282 957 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 CTSHP09668 335 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 HSPA1AP0DMV8 641 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 HSPA1BP0DMV9 641 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 GJC1P36383 396 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 ITKQ08881 620 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 NMIQ13287 307 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 IKBKEQ14164 716 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 ARHGAP29Q52LW3 1261 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 EFCAB13Q8IY85 973 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 KLHDC4Q8TBB5 520 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 NUP88Q99567 741 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 TET3O43151 1660 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 KDRP35968 1356 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 CABYRO75952 493 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PRKCQQ04759 706 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PPIGQ13427 754 aaKnown RBP eCLIP5.52□□□□□ -1.538e-7■■■□□ 15.7
SCN1A-218ENST00000640036 FAM178BQ8IXR5 827 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 TTC30BQ8N4P2 665 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PSPC1Q8WXF1 523 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 FAM204AQ9H8W3 233 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 HPCAL4Q9UM19 191 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 K7ERI5 159 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 STXBP3O00186 592 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 WDR46O15213 610 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 AFMP43652 599 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 HDLBPQ00341 1268 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 BTG3Q14201 252 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 EMILIN2Q9BXX0 1053 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 NPC1L1Q9UHC9 1359 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 TRAF5O00463 557 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 MAP2K2P36507 400 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PAFAH1B1P43034 410 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 PPFIA1Q13136 1202 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 MAPK6Q16659 721 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 MRPL50Q8N5N7 158 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 SKA2Q8WVK7 121 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 XPNPEP3Q9NQH7 507 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 ANO10Q9NW15 660 aa5.52□□□□□ -1.53
SCN1A-218ENST00000640036 CGNQ9P2M7 1197 aaKnown RBP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-218ENST00000640036 ADGRB2O60241 1585 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CLGNO14967 610 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 VAMP4O75379 141 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 GNRH1P01148 92 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 NT5DC4Q86YG4 428 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CELF1Q92879 486 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 USP25Q9UHP3 1055 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SERTAD1Q9UHV2 236 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 MICAL3Q7RTP6 2002 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 THPOP40225 353 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SYKP43405 635 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 KPNA1P52294 538 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 LBX1P52954 281 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 LACTBP83111 547 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CXCL9Q07325 125 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CNNM4Q6P4Q7 775 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 IFNL3Q8IZI9 196 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 PPP1R14CQ8TAE6 165 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CDCA5Q96FF9 252 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 PPP1R16BQ96T49 567 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms