RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TXNP10599 105 aaKnown RBP22.81■■□□□ 1.24
CLN3-262ENST00000637699 RFC2P35250 354 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 HAND2P61296 217 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 ZNF543Q08ER8 600 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 NFRKBQ6P4R8 1299 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 PNMA2Q9UL42 364 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 PRRC2BQ5JSZ5 2229 aaKnown RBP22.81■■□□□ 1.24
CLN3-262ENST00000637699 SCN10AQ9Y5Y9 1956 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 A0A0D9SFI3 127 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 GTPBP6O43824 516 aaPredicted RBP22.8■■□□□ 1.24
CLN3-262ENST00000637699 BMP1P13497 986 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 EDNRBP24530 442 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 MCMDC2Q4G0Z9 681 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 DNERQ8NFT8 737 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 SLC9A7Q96T83 725 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 NOD1Q9Y239 953 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 MTCH2Q9Y6C9 303 aa22.8■■□□□ 1.24
CLN3-262ENST00000637699 PITPNM1O00562 1244 aa22.79■■□□□ 1.24
CLN3-262ENST00000637699 HSPD1P10809 573 aaKnown RBP22.79■■□□□ 1.24
CLN3-262ENST00000637699 KCNQ1P51787 676 aa22.79■■□□□ 1.24
CLN3-262ENST00000637699 USH1GQ495M9 461 aa22.79■■□□□ 1.24
CLN3-262ENST00000637699 ARNTL2Q8WYA1 636 aa22.79■■□□□ 1.24
CLN3-262ENST00000637699 EPOPA6NHQ4 379 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 B4DLN1 442 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 ARIH2O95376 493 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 MRPL12P52815 198 aaKnown RBP22.78■■□□□ 1.24
CLN3-262ENST00000637699 PDE1AP54750 535 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 PTPN11Q06124 597 aaPredicted RBP22.78■■□□□ 1.24
CLN3-262ENST00000637699 BFSP2Q13515 415 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 AAK1Q2M2I8 961 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 KRT40Q6A162 431 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 HERC6Q8IVU3 1022 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 PHOSPHO2Q8TCD6 241 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 TTC14Q96N46 770 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 WDR19Q8NEZ3 1342 aa22.78■■□□□ 1.24
CLN3-262ENST00000637699 ARHGEF15O94989 841 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 GOLGA8HP0CJ92 632 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 SNHG28P0DPA3 235 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 TAP1Q03518 808 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 MFSD6Q6ZSS7 791 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 ZNF589Q86UQ0 364 aaPredicted RBP22.77■■□□□ 1.24
CLN3-262ENST00000637699 UBA5Q9GZZ9 404 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 CPVLQ9H3G5 476 aa22.77■■□□□ 1.24
CLN3-262ENST00000637699 KIF28PB7ZC32 967 aa22.76■■□□□ 1.23
CLN3-262ENST00000637699 POU3F3P20264 500 aaPredicted RBP22.76■■□□□ 1.23
CLN3-262ENST00000637699 NMIQ13287 307 aaPredicted RBP22.76■■□□□ 1.23
CLN3-262ENST00000637699 PTGISQ16647 500 aa22.76■■□□□ 1.23
CLN3-262ENST00000637699 AFG1LQ8WV93 481 aa22.76■■□□□ 1.23
CLN3-262ENST00000637699 ZKSCAN3Q9BRR0 538 aa22.76■■□□□ 1.23
CLN3-262ENST00000637699 TET1Q8NFU7 2136 aa22.75■■□□□ 1.23
CLN3-262ENST00000637699 SEPT14Q6ZU15 432 aa22.75■■□□□ 1.23
CLN3-262ENST00000637699 TBC1D10CQ8IV04 446 aa22.75■■□□□ 1.23
CLN3-262ENST00000637699 TBC1D5Q92609 795 aa22.75■■□□□ 1.23
CLN3-262ENST00000637699 LY6KQ17RY6 165 aa22.74■■□□□ 1.23
CLN3-262ENST00000637699 GPATCH4Q5T3I0 446 aaKnown RBP22.74■■□□□ 1.23
CLN3-262ENST00000637699 CCDC62Q6P9F0 684 aa22.74■■□□□ 1.23
CLN3-262ENST00000637699 CHST3Q7LGC8 479 aa22.74■■□□□ 1.23
CLN3-262ENST00000637699 RGS22Q8NE09 1264 aa22.74■■□□□ 1.23
CLN3-262ENST00000637699 ZMYM6O95789 1325 aa22.74■■□□□ 1.23
CLN3-262ENST00000637699 TANC1Q9C0D5 1861 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 TRIP12Q14669 1992 aaPredicted RBP22.73■■□□□ 1.23
CLN3-262ENST00000637699 TLL1O43897 1013 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 KCNJ6P48051 423 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 GDF6Q6KF10 455 aaPredicted RBP22.73■■□□□ 1.23
CLN3-262ENST00000637699 SPRED2Q7Z698 418 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 CCDC155Q8N6L0 562 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 TAAR1Q96RJ0 339 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 CCDC171Q6TFL3 1326 aa22.73■■□□□ 1.23
CLN3-262ENST00000637699 TRIM6-TRIM34B2RNG4 842 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 BAIAP3O94812 1187 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 GH1P01241 217 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 MMP3P08254 477 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 PCP11498 1178 aaKnown RBP22.72■■□□□ 1.23
CLN3-262ENST00000637699 TMCO2Q7Z6W1 182 aaPredicted RBP22.72■■□□□ 1.23
CLN3-262ENST00000637699 ESR2Q92731 530 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 RNF41Q9H4P4 317 aaPredicted RBP22.72■■□□□ 1.23
CLN3-262ENST00000637699 NEDD4P46934 1319 aa22.72■■□□□ 1.23
CLN3-262ENST00000637699 ARHGAP1Q07960 439 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 GRB10Q13322 594 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 GPNMBQ14956 572 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 CDC37Q16543 378 aaPredicted RBP22.71■■□□□ 1.23
CLN3-262ENST00000637699 CAGE1Q8TC20 777 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 SYTL5Q8TDW5 730 aaPredicted RBP22.71■■□□□ 1.23
CLN3-262ENST00000637699 AFAP1L1Q8TED9 768 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 RILPL2Q969X0 211 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 CTAGE1Q96RT6 745 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 COL20A1Q9P218 1284 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 COG5Q9UP83 839 aa22.71■■□□□ 1.23
CLN3-262ENST00000637699 LCHNA4D1U4 455 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 DGKHQ86XP1 1220 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 ADGRF4Q8IZF3 695 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 PNMA1Q8ND90 353 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 NSUN6Q8TEA1 469 aaKnown RBP22.7■■□□□ 1.22
CLN3-262ENST00000637699 KAT2BQ92831 832 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 ZBED2Q9BTP6 218 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 C1QTNF1Q9BXJ1 281 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 ABCB11O95342 1321 aa22.7■■□□□ 1.22
CLN3-262ENST00000637699 SELPP16109 830 aa22.69■■□□□ 1.22
CLN3-262ENST00000637699 CASTP20810 708 aaKnown RBP22.69■■□□□ 1.22
CLN3-262ENST00000637699 WDR5P61964 334 aaKnown RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms