RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 A6NJR5 290 aa21.58■■□□□ 1.05
CLN6-220ENST00000637450 SUPT20HL2P0C7V6 817 aa21.58■■□□□ 1.05
CLN6-220ENST00000637450 TXNP10599 105 aaKnown RBP21.58■■□□□ 1.05
CLN6-220ENST00000637450 COPS5Q92905 334 aa21.58■■□□□ 1.05
CLN6-220ENST00000637450 CNNM2Q9H8M5 875 aa21.58■■□□□ 1.05
CLN6-220ENST00000637450 TRMT13Q9NUP7 481 aaKnown RBP21.58■■□□□ 1.05
CLN6-220ENST00000637450 RAD50Q92878 1312 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 KPNA6O60684 536 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 PARP1P09874 1014 aaKnown RBP21.57■■□□□ 1.04
CLN6-220ENST00000637450 TTLL4Q14679 1199 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 QRICH1Q2TAL8 776 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 MCF2L2Q86YR7 1114 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 RPUSD2Q8IZ73 545 aaKnown RBP21.57■■□□□ 1.04
CLN6-220ENST00000637450 SYTL5Q8TDW5 730 aaPredicted RBP21.57■■□□□ 1.04
CLN6-220ENST00000637450 VWCEQ96DN2 955 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 TAAR1Q96RJ0 339 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 MTIF3Q9H2K0 278 aaKnown RBP21.57■■□□□ 1.04
CLN6-220ENST00000637450 JMJD4Q9H9V9 463 aa21.57■■□□□ 1.04
CLN6-220ENST00000637450 ARIH2O95376 493 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 PDE4AP27815 886 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 NBPF20Q3BBV1 942 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 CCDC62Q6P9F0 684 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 OTOP2Q7RTS6 562 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 NSUN6Q8TEA1 469 aaKnown RBP21.56■■□□□ 1.04
CLN6-220ENST00000637450 UBAC1Q9BSL1 405 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 VAT1LQ9HCJ6 419 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 COL20A1Q9P218 1284 aa21.56■■□□□ 1.04
CLN6-220ENST00000637450 MRPL11Q9Y3B7 192 aaKnown RBP21.56■■□□□ 1.04
CLN6-220ENST00000637450 CYP2C9P11712 490 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 GSPT1P15170 499 aaKnown RBP21.55■■□□□ 1.04
CLN6-220ENST00000637450 IFIT1BQ5T764 474 aaKnown RBP21.55■■□□□ 1.04
CLN6-220ENST00000637450 NFRKBQ6P4R8 1299 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 FBXO11Q86XK2 927 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 SCLYQ96I15 445 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 IWS1Q96ST2 819 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 MSRAQ9UJ68 235 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 CHD9Q3L8U1 2897 aa21.55■■□□□ 1.04
CLN6-220ENST00000637450 DHX16O60231 1041 aaKnown RBP21.54■■□□□ 1.04
CLN6-220ENST00000637450 SEC23AQ15436 765 aa21.54■■□□□ 1.04
CLN6-220ENST00000637450 RAB30Q15771 203 aa21.54■■□□□ 1.04
CLN6-220ENST00000637450 TTC22Q5TAA0 569 aa21.54■■□□□ 1.04
CLN6-220ENST00000637450 STAG2Q8N3U4 1231 aa21.54■■□□□ 1.04
CLN6-220ENST00000637450 SPTBN5Q9NRC6 3674 aaKnown RBP21.53■■□□□ 1.04
CLN6-220ENST00000637450 PTPN11Q06124 597 aaPredicted RBP21.53■■□□□ 1.04
CLN6-220ENST00000637450 STXBP2Q15833 593 aa21.53■■□□□ 1.04
CLN6-220ENST00000637450 SEPT14Q6ZU15 432 aa21.53■■□□□ 1.04
CLN6-220ENST00000637450 CYB5R4Q7L1T6 521 aa21.53■■□□□ 1.04
CLN6-220ENST00000637450 RMDN3Q96TC7 470 aa21.53■■□□□ 1.04
CLN6-220ENST00000637450 SUPT16HQ9Y5B9 1047 aaKnown RBP21.53■■□□□ 1.04
CLN6-220ENST00000637450 LY6KQ17RY6 165 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 FAM47CQ5HY64 1035 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 MTMR8Q96EF0 704 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 AMNQ9BXJ7 453 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 SLC4A7Q9Y6M7 1214 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 LAMA4Q16363 1823 aa21.52■■□□□ 1.04
CLN6-220ENST00000637450 KLRF2D3W0D1 207 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 GH1P01241 217 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 PFKMP08237 780 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 ARHGEF16Q5VV41 709 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 PPP1R13LQ8WUF5 828 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 AFG1LQ8WV93 481 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 NKX2-4Q9H2Z4 354 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 PRDM12Q9H4Q4 367 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 MAD2L2Q9UI95 211 aa21.51■■□□□ 1.03
CLN6-220ENST00000637450 YBX2Q9Y2T7 364 aaKnown RBP21.51■■□□□ 1.03
CLN6-220ENST00000637450 PALM3A6NDB9 673 aaPredicted RBP21.5■■□□□ 1.03
CLN6-220ENST00000637450 OPLAHO14841 1288 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 EIF3JO75822 258 aaKnown RBP21.5■■□□□ 1.03
CLN6-220ENST00000637450 HSD17B4P51659 736 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 GHRHRQ02643 423 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 ARHGAP1Q07960 439 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 USP38Q8NB14 1042 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 RUFY2Q8WXA3 655 aa21.5■■□□□ 1.03
CLN6-220ENST00000637450 GAS2L1Q99501 681 aaPredicted RBP21.5■■□□□ 1.03
CLN6-220ENST00000637450 SCN10AQ9Y5Y9 1956 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 PITPNM1O00562 1244 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 ZBTB5O15062 677 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 CFBP00751 764 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 NR3C2P08235 984 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 MMP3P08254 477 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 CYP21A2P08686 494 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 EIF2AK2P19525 551 aaKnown RBP21.49■■□□□ 1.03
CLN6-220ENST00000637450 CHMLP26374 656 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 PTH1RQ03431 593 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 TRDNQ13061 729 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 DEFB128Q7Z7B8 93 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 SLC28A3Q9HAS3 691 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 PXMP2Q9NR77 195 aa21.49■■□□□ 1.03
CLN6-220ENST00000637450 MAP3K20Q9NYL2 800 aaKnown RBP21.49■■□□□ 1.03
CLN6-220ENST00000637450 DDX41Q9UJV9 622 aaKnown RBP21.49■■□□□ 1.03
CLN6-220ENST00000637450 U3KPZ7 1027 aaPredicted RBP21.49■■□□□ 1.03
CLN6-220ENST00000637450 ZBBXA8MT70 800 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 PPP1R11O60927 126 aaPredicted RBP21.48■■□□□ 1.03
CLN6-220ENST00000637450 IQCF3P0C7M6 154 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 RFC2P35250 354 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 RABGGTBP53611 331 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 CHST3Q7LGC8 479 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 RETREG2Q8NC44 543 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 KAT2BQ92831 832 aa21.48■■□□□ 1.03
CLN6-220ENST00000637450 PCDHA11Q9Y5I1 949 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms