RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 SYNE3Q6ZMZ3 975 aa16■□□□□ 0.15
PNKP-228ENST00000637325 TDHQ8IZJ6 230 aa16■□□□□ 0.15
PNKP-228ENST00000637325 OR6J1Q8NGC5 347 aa16■□□□□ 0.15
PNKP-228ENST00000637325 SCFD2Q8WU76 684 aa16■□□□□ 0.15
PNKP-228ENST00000637325 IWS1Q96ST2 819 aa16■□□□□ 0.15
PNKP-228ENST00000637325 LZTS2Q9BRK4 669 aa16■□□□□ 0.15
PNKP-228ENST00000637325 LRRC2Q9BYS8 371 aa16■□□□□ 0.15
PNKP-228ENST00000637325 TMEM39AQ9NV64 488 aa16■□□□□ 0.15
PNKP-228ENST00000637325 SLC12A7Q9Y666 1083 aa16■□□□□ 0.15
PNKP-228ENST00000637325 ARVCFO00192 962 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 NKRFO15226 690 aaKnown RBP eCLIP15.99■□□□□ 0.15
PNKP-228ENST00000637325 CYTH3O43739 400 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 EIF2AK2P19525 551 aaKnown RBP15.99■□□□□ 0.15
PNKP-228ENST00000637325 KRT32Q14532 448 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 TTLL4Q14679 1199 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 STXBP2Q15833 593 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 SLC35G1Q2M3R5 365 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 TMEM63BQ5T3F8 832 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 SH3RF1Q7Z6J0 888 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 SAMD3Q8N6K7 520 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 RRP36Q96EU6 259 aaKnown RBP15.99■□□□□ 0.15
PNKP-228ENST00000637325 TOX2Q96NM4 488 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 MAP3K20Q9NYL2 800 aaKnown RBP15.99■□□□□ 0.15
PNKP-228ENST00000637325 COL20A1Q9P218 1284 aa15.99■□□□□ 0.15
PNKP-228ENST00000637325 SEC63Q9UGP8 760 aaKnown RBP15.99■□□□□ 0.15
PNKP-228ENST00000637325 TRIM43BA6NCK2 446 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 GCOM1H8Y6P7 765 aaPredicted RBP15.98■□□□□ 0.15
PNKP-228ENST00000637325 TLR3O15455 904 aaKnown RBP15.98■□□□□ 0.15
PNKP-228ENST00000637325 CENPBP07199 599 aaPredicted RBP15.98■□□□□ 0.15
PNKP-228ENST00000637325 POLR2MP0CAP2 368 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 TXNP10599 105 aaKnown RBP15.98■□□□□ 0.15
PNKP-228ENST00000637325 RAG1P15918 1043 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 CPT1AP50416 773 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 HSD17B4P51659 736 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 SEPT14Q6ZU15 432 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 ANKRD33Q7Z3H0 272 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 BADQ92934 168 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 TRIM43Q96BQ3 446 aaPredicted RBP15.98■□□□□ 0.15
PNKP-228ENST00000637325 PXMP2Q9NR77 195 aa15.98■□□□□ 0.15
PNKP-228ENST00000637325 KIAA0355O15063 1070 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 MYL3P08590 195 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 RXRAP19793 462 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 SMARCA1P28370 1054 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 HOXA13P31271 388 aaPredicted RBP15.97■□□□□ 0.15
PNKP-228ENST00000637325 CDK7P50613 346 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 TSGA10IPQ3SY00 556 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 DHX32Q7L7V1 743 aaKnown RBP15.97■□□□□ 0.15
PNKP-228ENST00000637325 RAB11FIP4Q86YS3 637 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 SPZ1Q9BXG8 430 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 POLR3EQ9NVU0 708 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 PPP4R2Q9NY27 417 aa15.97■□□□□ 0.15
PNKP-228ENST00000637325 OPLAHO14841 1288 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 EIF3JO75822 258 aaKnown RBP15.96■□□□□ 0.15
PNKP-228ENST00000637325 NR3C2P08235 984 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 HMGB1P09429 215 aaKnown RBP15.96■□□□□ 0.15
PNKP-228ENST00000637325 MYCLP12524 364 aaPredicted RBP15.96■□□□□ 0.15
PNKP-228ENST00000637325 FGD1P98174 961 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 FAAP100Q0VG06 881 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 ITGA7Q13683 1181 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 COL9A3Q14050 684 aaPredicted RBP15.96■□□□□ 0.15
PNKP-228ENST00000637325 FCHSD1Q86WN1 690 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 MICU3Q86XE3 530 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 RASEFQ8IZ41 740 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 COPS5Q92905 334 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 SEZ6LQ9BYH1 1024 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 SCN10AQ9Y5Y9 1956 aa15.96■□□□□ 0.15
PNKP-228ENST00000637325 TRIP12Q14669 1992 aaPredicted RBP15.95■□□□□ 0.14
PNKP-228ENST00000637325 REC8O95072 547 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 PLEKHA8P1O95397 391 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 GHRHRQ02643 423 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 ERICH6BQ5W0A0 696 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 SGMS1Q86VZ5 419 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 CMTR1Q8N1G2 835 aaKnown RBP15.95■□□□□ 0.14
PNKP-228ENST00000637325 SRBD1Q8N5C6 995 aaKnown RBP15.95■□□□□ 0.14
PNKP-228ENST00000637325 FANCBQ8NB91 859 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 CUL5Q93034 780 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 TCEANC2Q96MN5 208 aa15.95■□□□□ 0.14
PNKP-228ENST00000637325 KAT6AQ92794 2004 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 KPNA6O60684 536 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 ARIH2O95376 493 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 GH1P01241 217 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 PSMC6P62333 389 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 EXOSC10Q01780 885 aaKnown RBP15.94■□□□□ 0.14
PNKP-228ENST00000637325 LY6KQ17RY6 165 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 ADCK5Q3MIX3 580 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 LRIT3Q3SXY7 679 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 FAM126BQ8IXS8 530 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 CCDC82Q8N4S0 544 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 SMARCC2Q8TAQ2 1214 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 PDCD2LQ9BRP1 358 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 MTG1Q9BT17 334 aaPredicted RBP15.94■□□□□ 0.14
PNKP-228ENST00000637325 NAP1L2Q9ULW6 460 aaPredicted RBP15.94■□□□□ 0.14
PNKP-228ENST00000637325 MRVI1Q9Y6F6 885 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 DOCK5Q9H7D0 1870 aa15.94■□□□□ 0.14
PNKP-228ENST00000637325 SOX1O00570 391 aaPredicted RBP15.93■□□□□ 0.14
PNKP-228ENST00000637325 ZBTB43O43298 467 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 TIMP1P01033 207 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 CCND2P30279 289 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 FPGSQ05932 587 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 PGM5Q15124 567 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms