RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CUL9Q8IWT3 2517 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 CCDC85BQ15834 202 aaPredicted RBP18.91■□□□□ 0.62
CLN3-246ENST00000636228 IQCA1Q86XH1 822 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 SCFD2Q8WU76 684 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 ZSCAN10Q96SZ4 725 aaPredicted RBP18.91■□□□□ 0.62
CLN3-246ENST00000636228 MTIF3Q9H2K0 278 aaKnown RBP18.91■□□□□ 0.62
CLN3-246ENST00000636228 PNMA2Q9UL42 364 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 SLC4A7Q9Y6M7 1214 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 VCANP13611 3396 aa18.91■□□□□ 0.62
CLN3-246ENST00000636228 RBAK-RBAKDNI3L0D1 243 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 SUPT20HL2P0C7V6 817 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 IGFBP4P22692 258 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 TTLL4Q14679 1199 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 RAB30Q15771 203 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 RPUSD2Q8IZ73 545 aaKnown RBP18.9■□□□□ 0.62
CLN3-246ENST00000636228 ENAHQ8N8S7 591 aaPredicted RBP18.9■□□□□ 0.62
CLN3-246ENST00000636228 MPHOSPH6Q99547 160 aaKnown RBP18.9■□□□□ 0.62
CLN3-246ENST00000636228 IL25Q9H293 177 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 COL20A1Q9P218 1284 aa18.9■□□□□ 0.62
CLN3-246ENST00000636228 PRUNE2Q8WUY3 3088 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 A6NJR5 290 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 NKRFO15226 690 aaKnown RBP eCLIP18.89■□□□□ 0.61
CLN3-246ENST00000636228 DHX16O60231 1041 aaKnown RBP18.89■□□□□ 0.61
CLN3-246ENST00000636228 AAMPQ13685 434 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 LY6KQ17RY6 165 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 QRICH1Q2TAL8 776 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 BRDTQ58F21 947 aaPredicted RBP18.89■□□□□ 0.61
CLN3-246ENST00000636228 SEPT14Q6ZU15 432 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 RGS22Q8NE09 1264 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 SYTL5Q8TDW5 730 aaPredicted RBP18.89■□□□□ 0.61
CLN3-246ENST00000636228 ANKS1AQ92625 1134 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 SLC28A3Q9HAS3 691 aa18.89■□□□□ 0.61
CLN3-246ENST00000636228 SPTBN5Q9NRC6 3674 aaKnown RBP18.89■□□□□ 0.61
CLN3-246ENST00000636228 IMMTQ16891 758 aaKnown RBP18.88■□□□□ 0.61
CLN3-246ENST00000636228 CCDC178Q5BJE1 867 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 CHST3Q7LGC8 479 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 AFG1LQ8WV93 481 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 DSCC1Q9BVC3 393 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 JMJD4Q9H9V9 463 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 ABCB11O95342 1321 aa18.88■□□□□ 0.61
CLN3-246ENST00000636228 B4DLN1 442 aa18.87■□□□□ 0.61
CLN3-246ENST00000636228 MRPL12P52815 198 aaKnown RBP18.87■□□□□ 0.61
CLN3-246ENST00000636228 ASPRV1Q53RT3 343 aa18.87■□□□□ 0.61
CLN3-246ENST00000636228 CCDC62Q6P9F0 684 aa18.87■□□□□ 0.61
CLN3-246ENST00000636228 STAG2Q8N3U4 1231 aa18.87■□□□□ 0.61
CLN3-246ENST00000636228 RAD50Q92878 1312 aa18.87■□□□□ 0.61
CLN3-246ENST00000636228 HIP1O00291 1037 aa18.86■□□□□ 0.61
CLN3-246ENST00000636228 KPNA6O60684 536 aa18.86■□□□□ 0.61
CLN3-246ENST00000636228 PARP1P09874 1014 aaKnown RBP18.86■□□□□ 0.61
CLN3-246ENST00000636228 ATP2A2P16615 1042 aaKnown RBP18.86■□□□□ 0.61
CLN3-246ENST00000636228 EIF2AK2P19525 551 aaKnown RBP18.86■□□□□ 0.61
CLN3-246ENST00000636228 NFRKBQ6P4R8 1299 aa18.86■□□□□ 0.61
CLN3-246ENST00000636228 FBXO11Q86XK2 927 aa18.86■□□□□ 0.61
CLN3-246ENST00000636228 NSUN6Q8TEA1 469 aaKnown RBP18.86■□□□□ 0.61
CLN3-246ENST00000636228 RMDN3Q96TC7 470 aa18.86■□□□□ 0.61
CLN3-246ENST00000636228 CFBP00751 764 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 IQCF3P0C7M6 154 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 ARHGAP1Q07960 439 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 PPP2R2DQ66LE6 453 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 MCF2L2Q86YR7 1114 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 RETREG2Q8NC44 543 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 UBAC1Q9BSL1 405 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 KRT23Q9C075 422 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 FTOQ9C0B1 505 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-246ENST00000636228 CTNNA3Q9UI47 895 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 NOD1Q9Y239 953 aa18.85■□□□□ 0.61
CLN3-246ENST00000636228 MRPL11Q9Y3B7 192 aaKnown RBP18.85■□□□□ 0.61
CLN3-246ENST00000636228 RFXAPO00287 272 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 GH1P01241 217 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 MMP3P08254 477 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 STXBP2Q15833 593 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 TJAP1Q5JTD0 557 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 IFIT1BQ5T764 474 aaKnown RBP18.84■□□□□ 0.61
CLN3-246ENST00000636228 ARHGEF16Q5VV41 709 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 CYB5R4Q7L1T6 521 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 SYMPKQ92797 1274 aaKnown RBP18.84■□□□□ 0.61
CLN3-246ENST00000636228 KAT2BQ92831 832 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 CERS4Q9HA82 394 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 PCDHA11Q9Y5I1 949 aa18.84■□□□□ 0.61
CLN3-246ENST00000636228 CHD9Q3L8U1 2897 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 OPLAHO14841 1288 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 SORBS3O60504 671 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 PPP1R11O60927 126 aaPredicted RBP18.83■□□□□ 0.6
CLN3-246ENST00000636228 PFKMP08237 780 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 PDE4AP27815 886 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 PTPN11Q06124 597 aaPredicted RBP18.83■□□□□ 0.6
CLN3-246ENST00000636228 PTGISQ16647 500 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 GDF6Q6KF10 455 aaPredicted RBP18.83■□□□□ 0.6
CLN3-246ENST00000636228 MICALL1Q8N3F8 863 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 CTAGE1Q96RT6 745 aa18.83■□□□□ 0.6
CLN3-246ENST00000636228 KLRF2D3W0D1 207 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 CA3P07451 260 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 NR3C2P08235 984 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 GSPT1P15170 499 aaKnown RBP18.82■□□□□ 0.6
CLN3-246ENST00000636228 NT5C2P49902 561 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 SEC23AQ15436 765 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 ZFP91Q96JP5 570 aaPredicted RBP18.82■□□□□ 0.6
CLN3-246ENST00000636228 IWS1Q96ST2 819 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 AMNQ9BXJ7 453 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 CNNM2Q9H8M5 875 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms