RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 PCDHA1Q9Y5I3 950 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 SCN5AQ14524 2016 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 TRIM43BA6NCK2 446 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 CCDC69A6NI79 296 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 DCDC2CA8MYV0 355 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 DYNC1LI2O43237 492 aaPredicted RBP17.18■□□□□ 0.34
LINC00643-205ENST00000623219 PTGS1P23219 599 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 TMEM63BQ5T3F8 832 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 NFXL1Q6ZNB6 911 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 SH3RF1Q7Z6J0 888 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 TRIM43Q96BQ3 446 aaPredicted RBP17.18■□□□□ 0.34
LINC00643-205ENST00000623219 TAAR1Q96RJ0 339 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 PIGSQ96S52 555 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 RMDN3Q96TC7 470 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 MYL10Q9BUA6 226 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 SPZ1Q9BXG8 430 aa17.18■□□□□ 0.34
LINC00643-205ENST00000623219 GPHNQ9NQX3 736 aaPredicted RBP17.18■□□□□ 0.34
LINC00643-205ENST00000623219 PNMA6FA0A0J9YX94 578 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 ARVCFO00192 962 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 KIAA0355O15063 1070 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CALM1P0DP23 149 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CALM2P0DP24 149 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CALM3P0DP25 149 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CPT1AP50416 773 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CDK7P50613 346 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 FAAP100Q0VG06 881 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 COL9A3Q14050 684 aaPredicted RBP17.17■□□□□ 0.34
LINC00643-205ENST00000623219 LRIT3Q3SXY7 679 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 ARHGEF16Q5VV41 709 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 CXCL17Q6UXB2 119 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 VTI1AQ96AJ9 217 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 PXMP2Q9NR77 195 aa17.17■□□□□ 0.34
LINC00643-205ENST00000623219 KAT6AQ92794 2004 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 EIF2AK2P19525 551 aaKnown RBP17.16■□□□□ 0.34
LINC00643-205ENST00000623219 SMARCA1P28370 1054 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 KRT32Q14532 448 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 TTLL4Q14679 1199 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 STXBP2Q15833 593 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 TSGA10IPQ3SY00 556 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 SGMS1Q86VZ5 419 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 FAM126BQ8IXS8 530 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 OR6J1Q8NGC5 347 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 BADQ92934 168 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 LZTS2Q9BRK4 669 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 SEZ6LQ9BYH1 1024 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 TMEM39AQ9NV64 488 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 POLR3EQ9NVU0 708 aa17.16■□□□□ 0.34
LINC00643-205ENST00000623219 SOX1O00570 391 aaPredicted RBP17.15■□□□□ 0.34
LINC00643-205ENST00000623219 TLR3O15455 904 aaKnown RBP17.15■□□□□ 0.34
LINC00643-205ENST00000623219 TXNP10599 105 aaKnown RBP17.15■□□□□ 0.34
LINC00643-205ENST00000623219 RAG1P15918 1043 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 GNAQP50148 359 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 BRDTQ58F21 947 aaPredicted RBP17.15■□□□□ 0.34
LINC00643-205ENST00000623219 SLC43A3Q8NBI5 491 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 NEK1Q96PY6 1258 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 SEC63Q9UGP8 760 aaKnown RBP17.15■□□□□ 0.34
LINC00643-205ENST00000623219 TBX21Q9UL17 535 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 SLC12A7Q9Y666 1083 aa17.15■□□□□ 0.34
LINC00643-205ENST00000623219 WDR81Q562E7 1941 aa17.14■□□□□ 0.33
LINC00643-205ENST00000623219 ARIH2O95376 493 aa17.14■□□□□ 0.33
LINC00643-205ENST00000623219 PURAQ00577 322 aaKnown RBP17.14■□□□□ 0.33
LINC00643-205ENST00000623219 ITGA7Q13683 1181 aa17.14■□□□□ 0.33
LINC00643-205ENST00000623219 RRP36Q96EU6 259 aaKnown RBP17.14■□□□□ 0.33
LINC00643-205ENST00000623219 LRCH3Q96II8 777 aa17.14■□□□□ 0.33
LINC00643-205ENST00000623219 LRRC2Q9BYS8 371 aa17.14■□□□□ 0.33
LINC00643-205ENST00000623219 COL6A3P12111 3177 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 GCOM1H8Y6P7 765 aaPredicted RBP17.13■□□□□ 0.33
LINC00643-205ENST00000623219 PLEKHA8P1O95397 391 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 CD4P01730 458 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 NR3C2P08235 984 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 POLR2MP0CAP2 368 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 RXRAP19793 462 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 ITGB8P26012 769 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 ADCK5Q3MIX3 580 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 GPR153Q6NV75 609 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 CCDC62Q6P9F0 684 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 MICU3Q86XE3 530 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 RASEFQ8IZ41 740 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 PDCD2LQ9BRP1 358 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 FRMPD4Q14CM0 1322 aa17.13■□□□□ 0.33
LINC00643-205ENST00000623219 A6NJR5 290 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 EIF3JO75822 258 aaKnown RBP17.12■□□□□ 0.33
LINC00643-205ENST00000623219 TIMP1P01033 207 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 HMGB1P09429 215 aaKnown RBP17.12■□□□□ 0.33
LINC00643-205ENST00000623219 HOXA13P31271 388 aaPredicted RBP17.12■□□□□ 0.33
LINC00643-205ENST00000623219 PGM5Q15124 567 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 APOA5Q6Q788 366 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 SEPT14Q6ZU15 432 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 DHX32Q7L7V1 743 aaKnown RBP17.12■□□□□ 0.33
LINC00643-205ENST00000623219 SRBD1Q8N5C6 995 aaKnown RBP17.12■□□□□ 0.33
LINC00643-205ENST00000623219 PIBF1Q8WXW3 757 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 COPS5Q92905 334 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 GRIN2DO15399 1336 aa17.12■□□□□ 0.33
LINC00643-205ENST00000623219 KPNA6O60684 536 aa17.11■□□□□ 0.33
LINC00643-205ENST00000623219 REC8O95072 547 aa17.11■□□□□ 0.33
LINC00643-205ENST00000623219 GH1P01241 217 aa17.11■□□□□ 0.33
LINC00643-205ENST00000623219 MYL3P08590 195 aa17.11■□□□□ 0.33
LINC00643-205ENST00000623219 PSMC6P62333 389 aa17.11■□□□□ 0.33
LINC00643-205ENST00000623219 EXOSC10Q01780 885 aaKnown RBP17.11■□□□□ 0.33
LINC00643-205ENST00000623219 FPGSQ05932 587 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms