RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 B4GALT4O60513 344 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 TXNP10599 105 aaKnown RBP13.9□□□□□ -0.18
UPF3B-204ENST00000619445 USH1GQ495M9 461 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 IFIT1BQ5T764 474 aaKnown RBP13.9□□□□□ -0.18
UPF3B-204ENST00000619445 C16orf59Q7L2K0 433 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 FBXO11Q86XK2 927 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 ADGRF4Q8IZF3 695 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 PURBQ96QR8 312 aaKnown RBP13.9□□□□□ -0.18
UPF3B-204ENST00000619445 ZNF576Q9H609 170 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
UPF3B-204ENST00000619445 MYL3P08590 195 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 GOLGA8HP0CJ92 632 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 RFC2P35250 354 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 MAPK8IP2Q13387 824 aaPredicted RBP13.89□□□□□ -0.19
UPF3B-204ENST00000619445 SART3Q15020 963 aaKnown RBP13.89□□□□□ -0.19
UPF3B-204ENST00000619445 STXBP2Q15833 593 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 MYLIPQ8WY64 445 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 GAS2L1Q99501 681 aaPredicted RBP13.89□□□□□ -0.19
UPF3B-204ENST00000619445 AMNQ9BXJ7 453 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 UBA5Q9GZZ9 404 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 TRPV6Q9H1D0 765 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 KIAA1217Q5T5P2 1943 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 TTC28Q96AY4 2481 aa13.89□□□□□ -0.19
UPF3B-204ENST00000619445 ERICH2A1L162 156 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 PITPNM1O00562 1244 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 ACTN1P12814 892 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 PSMC6P62333 389 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 QRICH1Q2TAL8 776 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 CCDC155Q8N6L0 562 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 RMDN3Q96TC7 470 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 DDX49Q9Y6V7 483 aaKnown RBP13.88□□□□□ -0.19
UPF3B-204ENST00000619445 UNC80Q8N2C7 3258 aa13.88□□□□□ -0.19
UPF3B-204ENST00000619445 EIF3JO75822 258 aaKnown RBP13.87□□□□□ -0.19
UPF3B-204ENST00000619445 GH1P01241 217 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 ACRP10323 421 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 BFSP2Q13515 415 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 TTC22Q5TAA0 569 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 KCNV1Q6PIU1 500 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 RETREG2Q8NC44 543 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 SYTL5Q8TDW5 730 aaPredicted RBP13.87□□□□□ -0.19
UPF3B-204ENST00000619445 SYMPKQ92797 1274 aaKnown RBP13.87□□□□□ -0.19
UPF3B-204ENST00000619445 PBX4Q9BYU1 374 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 NOD1Q9Y239 953 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 SLC4A7Q9Y6M7 1214 aa13.87□□□□□ -0.19
UPF3B-204ENST00000619445 KLRF2D3W0D1 207 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 PARNO95453 639 aaKnown RBP13.86□□□□□ -0.19
UPF3B-204ENST00000619445 CASTP20810 708 aaKnown RBP13.86□□□□□ -0.19
UPF3B-204ENST00000619445 CCL23P55773 120 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 GHRHRQ02643 423 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 NBPF20Q3BBV1 942 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 FAM47CQ5HY64 1035 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 ARHGEF16Q5VV41 709 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 CCDC62Q6P9F0 684 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 RALYLQ86SE5 291 aaKnown RBP13.86□□□□□ -0.19
UPF3B-204ENST00000619445 EMID1Q96A84 441 aaPredicted RBP13.86□□□□□ -0.19
UPF3B-204ENST00000619445 JMJD4Q9H9V9 463 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 SLC28A3Q9HAS3 691 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 NCOR1O75376 2440 aa13.86□□□□□ -0.19
UPF3B-204ENST00000619445 ZBTB5O15062 677 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 GRIN2CQ14957 1233 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 SEC23AQ15436 765 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 DGKDQ16760 1214 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 TMEM63BQ5T3F8 832 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 SESTD1Q86VW0 696 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 CAGE1Q8TC20 777 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 KATNAL1Q9BW62 490 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 WNT8AQ9H1J5 351 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 CPVLQ9H3G5 476 aa13.85□□□□□ -0.19
UPF3B-204ENST00000619445 TRMT13Q9NUP7 481 aaKnown RBP13.85□□□□□ -0.19
UPF3B-204ENST00000619445 CFBP00751 764 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 NR3C2P08235 984 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 PTGS1P23219 599 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 HSD17B4P51659 736 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 LAMC2Q13753 1193 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 SEPT14Q6ZU15 432 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 OTOP2Q7RTS6 562 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 NCOA7Q8NI08 942 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 MTMR8Q96EF0 704 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 TAAR1Q96RJ0 339 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 VAT1LQ9HCJ6 419 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 PXMP2Q9NR77 195 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 PCDHA11Q9Y5I1 949 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 PCDHA1Q9Y5I3 950 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 UMODL1Q5DID0 1318 aa13.84□□□□□ -0.19
UPF3B-204ENST00000619445 PALM3A6NDB9 673 aaPredicted RBP13.83□□□□□ -0.19
UPF3B-204ENST00000619445 ZBBXA8MT70 800 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 IFIT3O14879 490 aaKnown RBP13.83□□□□□ -0.19
UPF3B-204ENST00000619445 MMP3P08254 477 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 TGFB3P10600 412 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 CYP2C9P11712 490 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 ATP2A2P16615 1042 aaKnown RBP13.83□□□□□ -0.19
UPF3B-204ENST00000619445 PHOSPHO2Q8TCD6 241 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 AFAP1L1Q8TED9 768 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 AFG1LQ8WV93 481 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 SLC9A7Q96T83 725 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 MTA3Q9BTC8 594 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 COL25A1Q9BXS0 654 aaPredicted RBP13.83□□□□□ -0.19
UPF3B-204ENST00000619445 CXXC1Q9P0U4 656 aaPredicted RBP13.83□□□□□ -0.19
UPF3B-204ENST00000619445 MAD2L2Q9UI95 211 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 SUPT16HQ9Y5B9 1047 aaKnown RBP13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms