RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KCNJ14Q9UNX9 436 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 KIF3AQ9Y496 699 aa22.63■■□□□ 1.21
UPF3A-211ENST00000618700 SOWAHBA6NEL2 793 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 ADAMTS3O15072 1205 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 IGHA2P01877 340 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 CYP2B6P20813 491 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 GNA11P29992 359 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 BECN1Q14457 450 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 GALNT17Q6IS24 598 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 ZNF467Q7Z7K2 595 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-211ENST00000618700 MAML3Q96JK9 1138 aa22.62■■□□□ 1.21
UPF3A-211ENST00000618700 FRMPD4Q14CM0 1322 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 DNERQ8NFT8 737 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 BICD2Q8TD16 824 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 C8orf76Q96K31 380 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 MCOLN1Q9GZU1 580 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 PCDHA4Q9UN74 947 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 PTCH2Q9Y6C5 1203 aa22.61■■□□□ 1.21
UPF3A-211ENST00000618700 LRRC37A2A6NM11 1700 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 M0R2N6 131 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 FOSBP53539 338 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 TRIM29Q14134 588 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 CCL14Q16627 93 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 OLFML2BQ68BL8 750 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 KRT40Q6A162 431 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 RAET1EQ8TD07 263 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 TAAR1Q96RJ0 339 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 PTPN22Q9Y2R2 807 aa22.6■■□□□ 1.21
UPF3A-211ENST00000618700 RPTORQ8N122 1335 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 LOC102724159A0A0B4J2E5 919 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 MMP1P03956 469 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 ALDH5A1P51649 535 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-211ENST00000618700 AP3B2Q13367 1082 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 PWP2Q15269 919 aaKnown RBP22.59■■□□□ 1.21
UPF3A-211ENST00000618700 FCHSD1Q86WN1 690 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 BLIDQ8IZY5 108 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 REXO1Q8N1G1 1221 aaKnown RBP22.59■■□□□ 1.21
UPF3A-211ENST00000618700 FBXO18Q8NFZ0 1043 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 PXYLP1Q8TE99 480 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 TRIB2Q92519 343 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 RMDN3Q96TC7 470 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 PXMP2Q9NR77 195 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 FLRT1Q9NZU1 646 aa22.59■■□□□ 1.21
UPF3A-211ENST00000618700 ADD3Q9UEY8 706 aaKnown RBP22.59■■□□□ 1.21
UPF3A-211ENST00000618700 EDNRBP24530 442 aa22.58■■□□□ 1.21
UPF3A-211ENST00000618700 PKN2Q16513 984 aaKnown RBP22.58■■□□□ 1.21
UPF3A-211ENST00000618700 MAMDC4Q6UXC1 1216 aa22.58■■□□□ 1.21
UPF3A-211ENST00000618700 TRMT44Q8IYL2 757 aaKnown RBP22.58■■□□□ 1.21
UPF3A-211ENST00000618700 MSL3Q8N5Y2 521 aaKnown RBP22.58■■□□□ 1.21
UPF3A-211ENST00000618700 MORC4Q8TE76 937 aa22.58■■□□□ 1.21
UPF3A-211ENST00000618700 TMEM260Q9NX78 707 aa22.58■■□□□ 1.21
UPF3A-211ENST00000618700 BIN2Q9UBW5 565 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-211ENST00000618700 ADCY3O60266 1144 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 FOSP01100 380 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-211ENST00000618700 HSP90AA1P07900 732 aaKnown RBP22.57■■□□□ 1.2
UPF3A-211ENST00000618700 GUCY1B3Q02153 619 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 MCTP2Q6DN12 878 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 SLAIN1Q8ND83 568 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 RASGRP4Q8TDF6 673 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 NSUN6Q8TEA1 469 aaKnown RBP22.57■■□□□ 1.2
UPF3A-211ENST00000618700 ABHD8Q96I13 439 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 ANO3Q9BYT9 981 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 PCDHA6Q9UN73 950 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 PCDHA8Q9Y5H6 950 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 SYNGAP1Q96PV0 1343 aa22.57■■□□□ 1.2
UPF3A-211ENST00000618700 SPDYE3A6NKU9 549 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 ELNP15502 786 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 EIF2AK2P19525 551 aaKnown RBP22.56■■□□□ 1.2
UPF3A-211ENST00000618700 ANP32AP39687 249 aaKnown RBP22.56■■□□□ 1.2
UPF3A-211ENST00000618700 JAKMIP3Q5VZ66 844 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 FBXO46Q6PJ61 603 aaPredicted RBP22.56■■□□□ 1.2
UPF3A-211ENST00000618700 DIS3L2Q8IYB7 885 aaKnown RBP22.56■■□□□ 1.2
UPF3A-211ENST00000618700 OXER1Q8TDS5 423 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 TNFRSF25Q93038 417 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 PDCD2LQ9BRP1 358 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 TINF2Q9BSI4 451 aa22.56■■□□□ 1.2
UPF3A-211ENST00000618700 ASB14A6NK59 587 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 KRT2P35908 639 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 ARHGEF16Q5VV41 709 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 ARMCX2Q7L311 632 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 IL31RAQ8NI17 732 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 PGBD1Q96JS3 809 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 IWS1Q96ST2 819 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 BRMS1Q9HCU9 246 aa22.55■■□□□ 1.2
UPF3A-211ENST00000618700 RBM19Q9Y4C8 960 aaKnown RBP22.55■■□□□ 1.2
UPF3A-211ENST00000618700 MCM3APO60318 1980 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 HMGCRP04035 888 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 PDCP20941 246 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 GRK4P32298 578 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 SREBF1P36956 1147 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 NUBP1P53384 320 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 NR5A1Q13285 461 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 PGM5Q15124 567 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 LARP1BQ659C4 914 aaKnown RBP22.54■■□□□ 1.2
UPF3A-211ENST00000618700 EHMT1Q9H9B1 1298 aa22.54■■□□□ 1.2
UPF3A-211ENST00000618700 DDX49Q9Y6V7 483 aaKnown RBP22.54■■□□□ 1.2
UPF3A-211ENST00000618700 SNAI1O95863 264 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-211ENST00000618700 NR3C2P08235 984 aa22.53■■□□□ 1.2
UPF3A-211ENST00000618700 KRT25Q7Z3Z0 450 aa22.53■■□□□ 1.2
UPF3A-211ENST00000618700 CRYGNQ8WXF5 182 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms