RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	NKRF	O15226	690 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	CLTB	P09497	229 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	SMARCA1	P28370	1054 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	MRPL12	P52815	198 aa	Known RBP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	TRAF1	Q13077	416 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	NECTIN1	Q15223	517 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	CDC37	Q16543	378 aa	Predicted RBP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	QRICH1	Q2TAL8	776 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	FAM109B	Q6ICB4	259 aa	Predicted RBP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	STOX1	Q6ZVD7	989 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	SH3RF1	Q7Z6J0	888 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	MCF2L2	Q86YR7	1114 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	STAG2	Q8N3U4	1231 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	IWS1	Q96ST2	819 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	CPVL	Q9H3G5	476 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	TBX21	Q9UL17	535 aa		12.5	□□□□□ -0.41
TPM2-208	ENST00000607559	MRPL11	Q9Y3B7	192 aa	Known RBP	12.5	□□□□□ -0.41
TPM2-208	ENST00000607559		A0A0U1RQG5	324 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	PTPDC1	A2A3K4	754 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	OPLAH	O14841	1288 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	PPP1R37	O75864	691 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	CD4	P01730	458 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	ITGB8	P26012	769 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	HSD17B4	P51659	736 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	ANTXR2	P58335	489 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	GRM4	Q14833	912 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	FSCN1	Q16658	493 aa	Known RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	SLC35G1	Q2M3R5	365 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	TSGA10IP	Q3SY00	556 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	CCDC62	Q6P9F0	684 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	SLC30A10	Q6XR72	485 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	KIAA1211	Q6ZU35	1233 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	FBXO11	Q86XK2	927 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	TMTC2	Q8N394	836 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	SYTL5	Q8TDW5	730 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	TBC1D5	Q92609	795 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	MPHOSPH6	Q99547	160 aa	Known RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	ESYT1	Q9BSJ8	1104 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	AMN	Q9BXJ7	453 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	WDR11	Q9BZH6	1224 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	MTMR10	Q9NXD2	777 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	STXBP5L	Q9Y2K9	1186 aa		12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	RBM8A	Q9Y5S9	174 aa	Known RBP	12.49	□□□□□ -0.41
TPM2-208	ENST00000607559	GRIN2D	O15399	1336 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559		A6NJR5	290 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	IFIT3	O14879	490 aa	Known RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	ZBTB5	O15062	677 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	DYNC1LI2	O43237	492 aa	Predicted RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	ZEB2	O60315	1214 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	TIMP1	P01033	207 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	SART3	Q15020	963 aa	Known RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	TMEM63B	Q5T3F8	832 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	RALYL	Q86SE5	291 aa	Known RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	TLK2	Q86UE8	772 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	FBXO16	Q8IX29	292 aa	Predicted RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	FAM126B	Q8IXS8	530 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	NSUN6	Q8TEA1	469 aa	Known RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	SCFD2	Q8WU76	684 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	BAD	Q92934	168 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	AP5M1	Q9H0R1	490 aa		12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	DDX49	Q9Y6V7	483 aa	Known RBP	12.48	□□□□□ -0.41
TPM2-208	ENST00000607559	ERICH2	A1L162	156 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	CYTH3	O43739	400 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	KPNA6	O60684	536 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	PPP1R11	O60927	126 aa	Predicted RBP	12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	CALML3	P27482	149 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	LIFR	P42702	1097 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559		Q7L0L9	218 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	TMEM87B	Q96K49	555 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	SENP2	Q9HC62	589 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	TMEM39A	Q9NV64	488 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	COL20A1	Q9P218	1284 aa		12.47	□□□□□ -0.41
TPM2-208	ENST00000607559	PNMA6F	A0A0J9YX94	578 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	SLC27A2	O14975	620 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	BEX3	Q00994	111 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	PDE4D	Q08499	809 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	ITGA7	Q13683	1181 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	WTAP	Q15007	396 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	STXBP2	Q15833	593 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	USH1G	Q495M9	461 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	MFSD5	Q6N075	450 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	CXCL17	Q6UXB2	119 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	EEPD1	Q7L9B9	569 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	TAAR1	Q96RJ0	339 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	SPZ1	Q9BXG8	430 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	LY9	Q9HBG7	655 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	POLR3E	Q9NVU0	708 aa		12.46	□□□□□ -0.41
TPM2-208	ENST00000607559	LCT	P09848	1927 aa		12.46	□□□□□ -0.42
TPM2-208	ENST00000607559	PQBP1	O60828	265 aa	Known RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	EIF3J	O75822	258 aa	Known RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	DDAH1	O94760	285 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	RAG1	P15918	1043 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	MCM5	P33992	734 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	CPT1A	P50416	773 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	PURA	Q00577	322 aa	Known RBP	12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	SHH	Q15465	462 aa		12.45	□□□□□ -0.42
TPM2-208	ENST00000607559	TMEM67	Q5HYA8	995 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms