RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PTPDC1A2A3K4 754 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 RANBP6O60518 1105 aaKnown RBP7.4□□□□□ -1.22
CUX1-220ENST00000607092 CA3P07451 260 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 MYL3P08590 195 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 MFAP1P55081 439 aaKnown RBP7.4□□□□□ -1.22
CUX1-220ENST00000607092 GPATCH4Q5T3I0 446 aaKnown RBP7.4□□□□□ -1.22
CUX1-220ENST00000607092 SYDE2Q5VT97 1194 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 RNF207Q6ZRF8 634 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 KCTD1Q719H9 257 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 EEPD1Q7L9B9 569 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 HERC6Q8IVU3 1022 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 ZBED2Q9BTP6 218 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 RNF41Q9H4P4 317 aaPredicted RBP7.4□□□□□ -1.22
CUX1-220ENST00000607092 TCP11L1Q9NUJ3 509 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 CTNNA3Q9UI47 895 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 RCAN3Q9UKA8 241 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 FAM50BQ9Y247 325 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.4□□□□□ -1.223e-7■■■□□ 17.9
CUX1-220ENST00000607092 MTCH2Q9Y6C9 303 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 GRIN2DO15399 1336 aa7.4□□□□□ -1.22
CUX1-220ENST00000607092 MCM3APO60318 1980 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 ZMYM6O95789 1325 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 UMODL1Q5DID0 1318 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 EMSYQ7Z589 1322 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 M0R2C6 588 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 TLL1O43897 1013 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 IQCF3P0C7M6 154 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 TXNP10599 105 aaKnown RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 CASTP20810 708 aaKnown RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 NOVP48745 357 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 RABGGTBP53611 331 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 PSMC6P62333 389 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 IRX5P78411 483 aaPredicted RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 TRAF1Q13077 416 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 BAATQ14032 418 aaPredicted RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 ALX1Q15699 326 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 NBPF20Q3BBV1 942 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 PUS10Q3MIT2 529 aaKnown RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 TMEM31Q5JXX7 168 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 ZMYM1Q5SVZ6 1142 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 DEFB128Q7Z7B8 93 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 SESTD1Q86VW0 696 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 MCF2L2Q86YR7 1114 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 SCLYQ96I15 445 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 IWS1Q96ST2 819 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 CRBNQ96SW2 442 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 KATNAL1Q9BW62 490 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 PDGFCQ9NRA1 345 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 HELLSQ9NRZ9 838 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 TOMM22Q9NS69 142 aa7.39□□□□□ -1.23
CUX1-220ENST00000607092 TRMT13Q9NUP7 481 aaKnown RBP7.39□□□□□ -1.23
CUX1-220ENST00000607092 ABHD14A-ACY1A0A1B0GW23 586 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 SMARCA5O60264 1052 aaPredicted RBP7.38□□□□□ -1.23
CUX1-220ENST00000607092 GPR37L1O60883 481 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 GH1P01241 217 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 CHGBP05060 677 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 FGRP09769 529 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 CYP2C9P11712 490 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 SELPP16109 830 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 MX1P20591 662 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 EDNRBP24530 442 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 CALML3P27482 149 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 RBL2Q08999 1139 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 PTGISQ16647 500 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 MUM1L1Q5H9M0 696 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 CNKSR3Q6P9H4 555 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 KCNV1Q6PIU1 500 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 C7orf31Q8N865 590 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 NSUN6Q8TEA1 469 aaKnown RBP7.38□□□□□ -1.23
CUX1-220ENST00000607092 ARNTL2Q8WYA1 636 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 EVI5LQ96CN4 794 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 SAMD11Q96NU1 681 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 RAD9AQ99638 391 aa7.38□□□□□ -1.23
CUX1-220ENST00000607092 ABCB11O95342 1321 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 ALADP13716 330 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 RPS6P62753 249 aaKnown RBP7.37□□□□□ -1.23
CUX1-220ENST00000607092 TAP1Q03518 808 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 IKBKEQ14164 716 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 STXBP2Q15833 593 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 DGKDQ16760 1214 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 PTPROQ16827 1216 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 LRRC8DQ7L1W4 858 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 IQCA1Q86XH1 822 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 SAMD3Q8N6K7 520 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 ESR2Q92731 530 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 TGS1Q96RS0 853 aaKnown RBP7.37□□□□□ -1.23
CUX1-220ENST00000607092 KCNH6Q9H252 994 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 IL17RBQ9NRM6 502 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 MAP3K20Q9NYL2 800 aaKnown RBP7.37□□□□□ -1.23
CUX1-220ENST00000607092 PCDHB8Q9UN66 801 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 PCDHB13Q9Y5F0 798 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 LRRC37A2A6NM11 1700 aa7.37□□□□□ -1.23
CUX1-220ENST00000607092 NFIBO00712 420 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 NCK2O43639 380 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 EIF3JO75822 258 aaKnown RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 GJB5O95377 273 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 CXCL10P02778 98 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 SNHG28P0DPA3 235 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 PDHBP11177 359 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 MYOGP15173 224 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms