RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 GJB6O95452 261 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 TP53P04637 393 aaPredicted RBP6.32□□□□□ -1.4
VRK3-222ENST00000601324 TNK2Q07912 1038 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 AUHQ13825 339 aaKnown RBP6.32□□□□□ -1.4
VRK3-222ENST00000601324 IFI16Q16666 785 aaKnown RBP6.32□□□□□ -1.4
VRK3-222ENST00000601324 NKPD1Q17RQ9 610 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 ANKRD39Q53RE8 183 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 SPACA3Q8IXA5 215 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 C7orf61Q8IZ16 206 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 JMYQ8N9B5 988 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 NETO1Q8TDF5 533 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 LNPKQ9C0E8 428 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 OSBPL2Q9H1P3 480 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 ST7Q9NRC1 585 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 FAM86C1Q9NVL1 165 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 ZC3H7BQ9UGR2 993 aaKnown RBP6.32□□□□□ -1.4
VRK3-222ENST00000601324 RNF112Q9ULX5 631 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 CRB1P82279 1406 aa6.32□□□□□ -1.4
VRK3-222ENST00000601324 POLR3AO14802 1390 aaPredicted RBP6.31□□□□□ -1.4
VRK3-222ENST00000601324 B2RBV5 119 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 RBAK-RBAKDNI3L0D1 243 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 GRIK1P39086 918 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 CLCN7P51798 805 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 DCAF15Q66K64 600 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 INTS5Q6P9B9 1019 aaKnown RBP6.31□□□□□ -1.4
VRK3-222ENST00000601324 HAUS7Q99871 368 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 PLAGL2Q9UPG8 496 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 MSRB2Q9Y3D2 182 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 PCDHB12Q9Y5F1 795 aa6.31□□□□□ -1.4
VRK3-222ENST00000601324 TMEM265A0A087WTH1 108 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 SHOXO15266 292 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 CBFA2T2O43439 604 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 NAT2P11245 290 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 HOXA10P31260 410 aaPredicted RBP6.3□□□□□ -1.4
VRK3-222ENST00000601324 EVA1CP58658 441 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 SAFB2Q14151 953 aaKnown RBP eCLIP6.3□□□□□ -1.4
VRK3-222ENST00000601324 MSMPQ1L6U9 139 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 HEATR6Q6AI08 1181 aaKnown RBP6.3□□□□□ -1.4
VRK3-222ENST00000601324 MRM1Q6IN84 353 aaKnown RBP6.3□□□□□ -1.4
VRK3-222ENST00000601324 PLD6Q8N2A8 252 aaKnown RBP6.3□□□□□ -1.4
VRK3-222ENST00000601324 MKL1Q969V6 931 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 GPR62Q9BZJ7 368 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 KLHL25Q9H0H3 589 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 PRR13Q9NZ81 148 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 ST14Q9Y5Y6 855 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 COL18A1P39060 1754 aa6.3□□□□□ -1.4
VRK3-222ENST00000601324 ANKRD34BA5PLL1 514 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 ADAM23O75077 832 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 COBLO75128 1261 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 GCP02774 474 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 EPHX1P07099 455 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 ZNF143P52747 638 aaPredicted RBP6.29□□□□□ -1.4
VRK3-222ENST00000601324 SNW1Q13573 536 aaKnown RBP6.29□□□□□ -1.4
VRK3-222ENST00000601324 DDB1Q16531 1140 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 QSER1Q2KHR3 1735 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 CDKAL1Q5VV42 579 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 DPH6Q7L8W6 267 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 EEPD1Q7L9B9 569 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 LRP10Q7Z4F1 713 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 PRDM14Q9GZV8 571 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 CCDC113Q9H0I3 377 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 ASCC2Q9H1I8 757 aaPredicted RBP6.29□□□□□ -1.4
VRK3-222ENST00000601324 GP6Q9HCN6 339 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 SUSD2Q9UGT4 822 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 FBXL21Q9UKT6 434 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 SNX11Q9Y5W9 270 aa6.29□□□□□ -1.4
VRK3-222ENST00000601324 PNPLA7Q6ZV29 1317 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 WNK3Q9BYP7 1800 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 SUSD5O60279 629 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 SRFP11831 508 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 ITGA4P13612 1032 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 CD247P20963 164 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 NMIQ13287 307 aaPredicted RBP6.28□□□□□ -1.4
VRK3-222ENST00000601324 RASA3Q14644 834 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 TCEAL1Q15170 157 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 RGL3Q3MIN7 710 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 CCDC144BQ3MJ40 725 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 THAP5Q7Z6K1 395 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 HSPA12BQ96MM6 686 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 DEPDC7Q96QD5 511 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 GBP3Q9H0R5 595 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 DUSP15Q9H1R2 295 aaPredicted RBP6.28□□□□□ -1.4
VRK3-222ENST00000601324 TRIT1Q9H3H1 467 aaKnown RBP6.28□□□□□ -1.4
VRK3-222ENST00000601324 GPATCH2Q9NW75 528 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 WHRNQ9P202 907 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 ZNF451Q9Y4E5 1061 aa6.28□□□□□ -1.4
VRK3-222ENST00000601324 EIF3AQ14152 1382 aaKnown RBP6.28□□□□□ -1.4
VRK3-222ENST00000601324 PITPNM2Q9BZ72 1349 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 NHSQ6T4R5 1651 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 SLIT3O75094 1523 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 A0A087WZG4 1122 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 SHISA3A0PJX4 238 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 H3BS24 57 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 PDPK1O15530 556 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 SIGLEC6O43699 453 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 RASGRF1Q13972 1273 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 NFE2L2Q16236 605 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 CLEC16AQ2KHT3 1053 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 TMC3Q7Z5M5 1100 aa6.27□□□□□ -1.41
VRK3-222ENST00000601324 NGDNQ8NEJ9 315 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms