RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 RPS6P62753 249 aaKnown RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 PTPN11Q06124 597 aaPredicted RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 GRB10Q13322 594 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 AAK1Q2M2I8 961 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 LRRFIP1Q32MZ4 808 aaKnown RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 SLC30A10Q6XR72 485 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 MICALL1Q8N3F8 863 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 RGS22Q8NE09 1264 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 OR6J1Q8NGC5 347 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 DHX38Q92620 1227 aaKnown RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 KAT2BQ92831 832 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 GPATCH3Q96I76 525 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 SLC9A7Q96T83 725 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 GPCPD1Q9NPB8 672 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 CD320Q9NPF0 282 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 C11orf16Q9NQ32 467 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 COG5Q9UP83 839 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 LCTP09848 1927 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 TET1Q8NFU7 2136 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 SCN10AQ9Y5Y9 1956 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 BRWD1Q9NSI6 2320 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 LRRC37A2A6NM11 1700 aa7.21□□□□□ -1.25
VRK3-220ENST00000600259 TCF20Q9UGU0 1960 aaKnown RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 LCHNA4D1U4 455 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 CXCL10P02778 98 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 PDHBP11177 359 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 CALML3P27482 149 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 ARHGAP1Q07960 439 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 RBL2Q08999 1139 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 ZNF543Q08ER8 600 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 GDF6Q6KF10 455 aaPredicted RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 TRAF7Q6Q0C0 670 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 RNF207Q6ZRF8 634 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 SESTD1Q86VW0 696 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 DNERQ8NFT8 737 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 SCFD2Q8WU76 684 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 ARNTL2Q8WYA1 636 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 TTC14Q96N46 770 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 FSD1Q9BTV5 496 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 C1QTNF1Q9BXJ1 281 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 TSPYL2Q9H2G4 693 aaPredicted RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 LMCD1Q9NZU5 365 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 ISY1Q9ULR0 285 aaKnown RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 MTMR7Q9Y216 660 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 ARIH1Q9Y4X5 557 aaPredicted RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 GBF1Q92538 1859 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 FRMPD2Q68DX3 1309 aaPredicted RBP7.21□□□□□ -1.26
VRK3-220ENST00000600259 WDR19Q8NEZ3 1342 aa7.21□□□□□ -1.26
VRK3-220ENST00000600259 PTPDC1A2A3K4 754 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 GTPBP6O43824 516 aaPredicted RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 GPR37L1O60883 481 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 NBNO60934 754 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 BAIAP3O94812 1187 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 TXNP10599 105 aaKnown RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 ACTN1P12814 892 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 WDR5P61964 334 aaKnown RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 DEFB103AP81534 67 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 PDE4DQ08499 809 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 MKRN4PQ13434 485 aaPredicted RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 BFSP2Q13515 415 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 HIC1Q14526 733 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 MBTPS1Q14703 1052 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 PPP2R5BQ15173 497 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 CCDC96Q2M329 555 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 TRIM71Q2Q1W2 868 aaKnown RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 FAM47CQ5HY64 1035 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 TMCO2Q7Z6W1 182 aaPredicted RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 RETREG2Q8NC44 543 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 SYTL5Q8TDW5 730 aaPredicted RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 AFG1LQ8WV93 481 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 HLA-CQ95604 372 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 FAM122AQ96E09 287 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 FAM227BQ96M60 508 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 TAAR1Q96RJ0 339 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 FTOQ9C0B1 505 aaKnown RBP eCLIP7.2□□□□□ -1.26
VRK3-220ENST00000600259 MAF1Q9H063 256 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 CPVLQ9H3G5 476 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 SUGCTQ9HAC7 445 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 GPHNQ9NQX3 736 aaPredicted RBP7.2□□□□□ -1.26
VRK3-220ENST00000600259 HELLSQ9NRZ9 838 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 COL20A1Q9P218 1284 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 SCN5AQ14524 2016 aa7.2□□□□□ -1.26
VRK3-220ENST00000600259 A0A0D9SFI3 127 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 KIF28PB7ZC32 967 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 PI4K2BG5E9Z4 385 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 HAS3O00219 553 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 MMP3P08254 477 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 HSPD1P10809 573 aaKnown RBP7.19□□□□□ -1.26
VRK3-220ENST00000600259 CKBP12277 381 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 HOXD8P13378 290 aaPredicted RBP7.19□□□□□ -1.26
VRK3-220ENST00000600259 SELPP16109 830 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 MX1P20591 662 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 ERVK-21P61565 698 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 SKIV2LQ15477 1246 aaKnown RBP7.19□□□□□ -1.26
VRK3-220ENST00000600259 PTGISQ16647 500 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 LY6KQ17RY6 165 aa7.19□□□□□ -1.26
VRK3-220ENST00000600259 BRDTQ58F21 947 aaPredicted RBP7.19□□□□□ -1.26
VRK3-220ENST00000600259 DIEXFQ68CQ4 756 aaKnown RBP7.19□□□□□ -1.26
VRK3-220ENST00000600259 ZNF589Q86UQ0 364 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms