RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 ZNF865P0CJ78 1059 aaPredicted RBP23.37■■□□□ 1.33
PNKP-211ENST00000598020 CAPN2P17655 700 aa23.37■■□□□ 1.33
PNKP-211ENST00000598020 CCND3P30281 292 aaPredicted RBP23.37■■□□□ 1.33
PNKP-211ENST00000598020 NSUN7Q8NE18 718 aaKnown RBP23.37■■□□□ 1.33
PNKP-211ENST00000598020 LLPHQ9BRT6 129 aaKnown RBP23.37■■□□□ 1.33
PNKP-211ENST00000598020 ZMYND12Q9H0C1 365 aa23.37■■□□□ 1.33
PNKP-211ENST00000598020 PXMP2Q9NR77 195 aa23.37■■□□□ 1.33
PNKP-211ENST00000598020 FRMPD4Q14CM0 1322 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 SMCO2A6NFE2 343 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 CD2BP2O95400 341 aaKnown RBP23.36■■□□□ 1.33
PNKP-211ENST00000598020 ACVR2BQ13705 512 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 PRAMEF19Q5SWL8 479 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 USP17L6PQ6QN14 398 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 CCDC148Q8NFR7 591 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 SMARCC2Q8TAQ2 1214 aa23.36■■□□□ 1.33
PNKP-211ENST00000598020 CCDC85CA6NKD9 419 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 SEPT4O43236 478 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 ADCY7P51828 1080 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 ARHGEF16Q5VV41 709 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 PDCD2LQ9BRP1 358 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 VTA1Q9NP79 307 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 ORC3Q9UBD5 711 aaPredicted RBP23.35■■□□□ 1.33
PNKP-211ENST00000598020 CENPFP49454 3210 aa23.35■■□□□ 1.33
PNKP-211ENST00000598020 MSCO60682 206 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 MYCP01106 439 aaPredicted RBP23.34■■□□□ 1.33
PNKP-211ENST00000598020 FDPSP14324 419 aaKnown RBP23.34■■□□□ 1.33
PNKP-211ENST00000598020 GNA11P29992 359 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 PDE4DQ08499 809 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 FCHSD1Q86WN1 690 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 CCDC83Q8IWF9 413 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 WASF1Q92558 559 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 SHISA4Q96DD7 197 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 TMX3Q96JJ7 454 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 C6orf50Q9HD87 102 aa23.34■■□□□ 1.33
PNKP-211ENST00000598020 LRRC37A2A6NM11 1700 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 SGPL1O95470 568 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 FOSP01100 380 aaPredicted RBP23.33■■□□□ 1.33
PNKP-211ENST00000598020 NR3C2P08235 984 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 GJA8P48165 433 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 CLK2P49760 499 aaKnown RBP23.33■■□□□ 1.33
PNKP-211ENST00000598020 LHX8Q68G74 356 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 CRISPLD2Q9H0B8 497 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 VPS54Q9P1Q0 977 aa23.33■■□□□ 1.33
PNKP-211ENST00000598020 DDX20Q9UHI6 824 aaKnown RBP23.33■■□□□ 1.33
PNKP-211ENST00000598020 AKR1A1P14550 325 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 EIF2AK2P19525 551 aaKnown RBP23.32■■□□□ 1.32
PNKP-211ENST00000598020 CNGA1P29973 690 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 PGM5Q15124 567 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 STXBP2Q15833 593 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 MCTP2Q6DN12 878 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 VSIG10LQ86VR7 867 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 U2AF1L4Q8WU68 220 aaKnown RBP23.32■■□□□ 1.32
PNKP-211ENST00000598020 DEFB118Q96PH6 123 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 FAM184BQ9ULE4 1060 aa23.32■■□□□ 1.32
PNKP-211ENST00000598020 DDX49Q9Y6V7 483 aaKnown RBP23.32■■□□□ 1.32
PNKP-211ENST00000598020 RBM47A0AV96 593 aaKnown RBP23.31■■□□□ 1.32
PNKP-211ENST00000598020 EIF3JO75822 258 aaKnown RBP23.31■■□□□ 1.32
PNKP-211ENST00000598020 AP3B2Q13367 1082 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 UBE2SQ16763 222 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 GALNT17Q6IS24 598 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 TAPT1Q6NXT6 567 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 BICD2Q8TD16 824 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 AIFM3Q96NN9 605 aa23.31■■□□□ 1.32
PNKP-211ENST00000598020 ZHX1Q9UKY1 873 aaPredicted RBP23.31■■□□□ 1.32
PNKP-211ENST00000598020 SPDYE3A6NKU9 549 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 JAK2O60674 1132 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 XBP1P17861 261 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 CCDC144BQ3MJ40 725 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 IQSEC1Q6DN90 963 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 XRRA1Q6P2D8 792 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 FBXO16Q8IX29 292 aaPredicted RBP23.3■■□□□ 1.32
PNKP-211ENST00000598020 OGDHLQ9ULD0 1010 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 PCDHA6Q9UN73 950 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 PCDHA8Q9Y5H6 950 aa23.3■■□□□ 1.32
PNKP-211ENST00000598020 POTEFA5A3E0 1075 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 STAM2O75886 525 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 CCND2P30279 289 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 NLRP5P59047 1200 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 HMGN5P82970 282 aaKnown RBP23.29■■□□□ 1.32
PNKP-211ENST00000598020 EEPD1Q7L9B9 569 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 DAGLBQ8NCG7 672 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 IL31RAQ8NI17 732 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 ALG1Q9BT22 464 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 EHMT1Q9H9B1 1298 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 KIAA1217Q5T5P2 1943 aa23.29■■□□□ 1.32
PNKP-211ENST00000598020 NPY5RQ15761 445 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 PCNX4Q63HM2 1172 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 REXO1Q8N1G1 1221 aaKnown RBP23.28■■□□□ 1.32
PNKP-211ENST00000598020 SNX21Q969T3 373 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 PHF20Q9BVI0 1012 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 PDGFCQ9NRA1 345 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 PCDHA4Q9UN74 947 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 FRMPD3Q5JV73 1810 aa23.28■■□□□ 1.32
PNKP-211ENST00000598020 DTNBO60941 627 aa23.27■■□□□ 1.32
PNKP-211ENST00000598020 DUSP11O75319 330 aaKnown RBP23.27■■□□□ 1.32
PNKP-211ENST00000598020 RARBP10826 455 aa23.27■■□□□ 1.32
PNKP-211ENST00000598020 SCFD2Q8WU76 684 aa23.27■■□□□ 1.32
PNKP-211ENST00000598020 ANO3Q9BYT9 981 aa23.27■■□□□ 1.32
PNKP-211ENST00000598020 M0R2N6 131 aa23.26■■□□□ 1.31
PNKP-211ENST00000598020 ADAMTS3O15072 1205 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms