RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PDE4DQ08499 809 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 ZNF543Q08ER8 600 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 PPP2R5BQ15173 497 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 NBPF20Q3BBV1 942 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 RRP12Q5JTH9 1297 aaKnown RBP14.7□□□□□ -0.06
TRIM28-212ENST00000597995 PPP2R2DQ66LE6 453 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 SLC30A10Q6XR72 485 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 RGS22Q8NE09 1264 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 TSPYL2Q9H2G4 693 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-212ENST00000597995 SCN10AQ9Y5Y9 1956 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 PITPNM1O00562 1244 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 POU3F3P20264 500 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-212ENST00000597995 NT5C2P49902 561 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 NMIQ13287 307 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-212ENST00000597995 TTLL4Q14679 1199 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 TMEM67Q5HYA8 995 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 MFSD6Q6ZSS7 791 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 ZNF589Q86UQ0 364 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-212ENST00000597995 PHOSPHO2Q8TCD6 241 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 ADAMTS19Q8TE59 1207 aa14.69□□□□□ -0.06
TRIM28-212ENST00000597995 TXNP10599 105 aaKnown RBP14.68□□□□□ -0.06
TRIM28-212ENST00000597995 MYOGP15173 224 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 PDE4AP27815 886 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 BFSP2Q13515 415 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 FAM47CQ5HY64 1035 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 GPATCH4Q5T3I0 446 aaKnown RBP14.68□□□□□ -0.06
TRIM28-212ENST00000597995 DEFB128Q7Z7B8 93 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 RETREG2Q8NC44 543 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 IL27Q8NEV9 243 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 SLC9A7Q96T83 725 aa14.68□□□□□ -0.06
TRIM28-212ENST00000597995 RNF41Q9H4P4 317 aaPredicted RBP14.68□□□□□ -0.06
TRIM28-212ENST00000597995 TRIM6-TRIM34B2RNG4 842 aa14.67□□□□□ -0.06
TRIM28-212ENST00000597995 IQCF3P0C7M6 154 aa14.67□□□□□ -0.06
TRIM28-212ENST00000597995 DGKHQ86XP1 1220 aa14.67□□□□□ -0.06
TRIM28-212ENST00000597995 RILPL2Q969X0 211 aa14.67□□□□□ -0.06
TRIM28-212ENST00000597995 UHRF1Q96T88 793 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-212ENST00000597995 CCDC171Q6TFL3 1326 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 SDSP20132 328 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 HAND2P61296 217 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 AAK1Q2M2I8 961 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 CCDC178Q5BJE1 867 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 CCDC62Q6P9F0 684 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 ESR2Q92731 530 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 COPS5Q92905 334 aa14.66□□□□□ -0.06
TRIM28-212ENST00000597995 SCN5AQ14524 2016 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 KIF28PB7ZC32 967 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 GTPBP6O43824 516 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-212ENST00000597995 CA3P07451 260 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 BMP1P13497 986 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 COL9A1P20849 921 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 MFAP1P55081 439 aaKnown RBP14.65□□□□□ -0.06
TRIM28-212ENST00000597995 SESTD1Q86VW0 696 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 NOD1Q9Y239 953 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 MTCH2Q9Y6C9 303 aa14.65□□□□□ -0.06
TRIM28-212ENST00000597995 BAIAP3O94812 1187 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 ARIH2O95376 493 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 USH1GQ495M9 461 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 TBC1D10CQ8IV04 446 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 HERC6Q8IVU3 1022 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 CCDC155Q8N6L0 562 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 CAGE1Q8TC20 777 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 NSUN6Q8TEA1 469 aaKnown RBP14.64□□□□□ -0.07
TRIM28-212ENST00000597995 ANKS1AQ92625 1134 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 IWS1Q96ST2 819 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 FTOQ9C0B1 505 aaKnown RBP eCLIP14.64□□□□□ -0.075e-6■■■■□ 23.7
TRIM28-212ENST00000597995 UBA5Q9GZZ9 404 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 TRANK1O15050 2925 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 ABCB11O95342 1321 aa14.64□□□□□ -0.07
TRIM28-212ENST00000597995 PRRC2BQ5JSZ5 2229 aaKnown RBP14.64□□□□□ -0.07
TRIM28-212ENST00000597995 ZNF213O14771 459 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 PARNO95453 639 aaKnown RBP14.63□□□□□ -0.07
TRIM28-212ENST00000597995 GH1P01241 217 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 GOLGA8HP0CJ92 632 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 TAP1Q03518 808 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 PTGISQ16647 500 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 IQCA1Q86XH1 822 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 MCF2L2Q86YR7 1114 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 MICALL1Q8N3F8 863 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 PNMA1Q8ND90 353 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 SYTL5Q8TDW5 730 aaPredicted RBP14.63□□□□□ -0.07
TRIM28-212ENST00000597995 AFAP1L1Q8TED9 768 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 AFG1LQ8WV93 481 aa14.63□□□□□ -0.07
TRIM28-212ENST00000597995 TET1Q8NFU7 2136 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 RFXAPO00287 272 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 MMP3P08254 477 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 GSPT1P15170 499 aaKnown RBP14.62□□□□□ -0.07
TRIM28-212ENST00000597995 CASTP20810 708 aaKnown RBP14.62□□□□□ -0.07
TRIM28-212ENST00000597995 ARHGAP1Q07960 439 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 RBL2Q08999 1139 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 STXBP2Q15833 593 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 CDC37Q16543 378 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-212ENST00000597995 ASPRV1Q53RT3 343 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 ADGRF4Q8IZF3 695 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 PPP1R13LQ8WUF5 828 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 TBC1D5Q92609 795 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 TAAR1Q96RJ0 339 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 ZKSCAN3Q9BRR0 538 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 TANC1Q9C0D5 1861 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 IL25Q9H293 177 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 KAT14Q9H8E8 782 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms