RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	GPHN	Q9NQX3	736 aa	Predicted RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	ZSWIM5	Q9P217	1185 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	COL20A1	Q9P218	1284 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	YBX2	Q9Y2T7	364 aa	Known RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	TXN	P10599	105 aa	Known RBP	12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	RAB30	Q15771	203 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	PPM1E	Q8WY54	764 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	ANKS1A	Q92625	1134 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	MPHOSPH6	Q99547	160 aa	Known RBP	12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	DSCC1	Q9BVC3	393 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	PRDM6	Q9NQX0	595 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	MSRA	Q9UJ68	235 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	RAD50	Q92878	1312 aa		12.32	□□□□□ -0.44
LSM4-205	ENST00000597776	GBF1	Q92538	1859 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776		A6NJR5	290 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	ZBBX	A8MT70	800 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	NKRF	O15226	690 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	DHX16	O60231	1041 aa	Known RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	SUPT20HL2	P0C7V6	817 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	MYOG	P15173	224 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	CHMP4BP1	P59074	171 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	ADGRE1	Q14246	886 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	TTLL4	Q14679	1199 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	IMMT	Q16891	758 aa	Known RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	QRICH1	Q2TAL8	776 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	ASPRV1	Q53RT3	343 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	BRDT	Q58F21	947 aa	Predicted RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	DEFB128	Q7Z7B8	93 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	RPUSD2	Q8IZ73	545 aa	Known RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	RGS22	Q8NE09	1264 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	SYTL5	Q8TDW5	730 aa	Predicted RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	TAAR1	Q96RJ0	339 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	GAS2L1	Q99501	681 aa	Predicted RBP	12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	VAT1L	Q9HCJ6	419 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	SLC4A7	Q9Y6M7	1214 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	ABCB11	O95342	1321 aa		12.31	□□□□□ -0.44
LSM4-205	ENST00000597776	SCN10A	Q9Y5Y9	1956 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	HIP1	O00291	1037 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	PARP1	P09874	1014 aa	Known RBP	12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	LY6K	Q17RY6	165 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	CCDC178	Q5BJE1	867 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	CCDC62	Q6P9F0	684 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	SEPT14	Q6ZU15	432 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	STAG2	Q8N3U4	1231 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	AFG1L	Q8WV93	481 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	UBAC1	Q9BSL1	405 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	JMJD4	Q9H9V9	463 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	SLC28A3	Q9HAS3	691 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	REV3L	O60673	3130 aa		12.3	□□□□□ -0.44
LSM4-205	ENST00000597776	SCN5A	Q14524	2016 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776		B4DLN1	442 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	KPNA6	O60684	536 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	ATP2A2	P16615	1042 aa	Known RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	EIF2AK2	P19525	551 aa	Known RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	IGFBP4	P22692	258 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	PDE4A	P27815	886 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	NT5C2	P49902	561 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	MRPL12	P52815	198 aa	Known RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	ARHGAP1	Q07960	439 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	CCDC85B	Q15834	202 aa	Predicted RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	IFIT1B	Q5T764	474 aa	Known RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	NFRKB	Q6P4R8	1299 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	CYB5R4	Q7L1T6	521 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	CHST3	Q7LGC8	479 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	FBXO11	Q86XK2	927 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	NSUN6	Q8TEA1	469 aa	Known RBP	12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	RMDN3	Q96TC7	470 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	KRT23	Q9C075	422 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	CTNNA3	Q9UI47	895 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	MUC3A	Q02505	3323 aa		12.29	□□□□□ -0.44
LSM4-205	ENST00000597776	RBAK-RBAKDN	I3L0D1	243 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	OPLAH	O14841	1288 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	PPP1R11	O60927	126 aa	Predicted RBP	12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	CFB	P00751	764 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	GH1	P01241	217 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	PFKM	P08237	780 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	MMP3	P08254	477 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	GSPT1	P15170	499 aa	Known RBP	12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	STXBP2	Q15833	593 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	ARHGEF16	Q5VV41	709 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	PPP2R2D	Q66LE6	453 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	MCF2L2	Q86YR7	1114 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	CNNM2	Q9H8M5	875 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	NOD1	Q9Y239	953 aa		12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	MRPL11	Q9Y3B7	192 aa	Known RBP	12.28	□□□□□ -0.44
LSM4-205	ENST00000597776	TANC1	Q9C0D5	1861 aa		12.27	□□□□□ -0.44
LSM4-205	ENST00000597776	XIRP2	A4UGR9	3374 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	PITPNM1	O00562	1244 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	IQCF3	P0C7M6	154 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	SEC23A	Q15436	765 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	PTGIS	Q16647	500 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	TJAP1	Q5JTD0	557 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	GDF6	Q6KF10	455 aa	Predicted RBP	12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	RETREG2	Q8NC44	543 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	KAT2B	Q92831	832 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	CTAGE1	Q96RT6	745 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	IWS1	Q96ST2	819 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	FTO	Q9C0B1	505 aa	Known RBP eCLIP	12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	PXMP2	Q9NR77	195 aa		12.27	□□□□□ -0.45
LSM4-205	ENST00000597776	PCDHA11	Q9Y5I1	949 aa		12.27	□□□□□ -0.45

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