RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PDGFCQ9NRA1 345 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 NRBP1Q9UHY1 535 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 LRRC37A2A6NM11 1700 aa12.77□□□□□ -0.36
LIG1-211ENST00000596457 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 DTNBO60941 627 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 ADCYAP1R1P41586 468 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 HSD17B4P51659 736 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 SSRP1Q08945 709 aaKnown RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 FUT2Q10981 343 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 ANKRD1Q15327 319 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 WWC2Q6AWC2 1192 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 USP17L6PQ6QN14 398 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 CHRDL2Q6WN34 429 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 DNERQ8NFT8 737 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 NSUN6Q8TEA1 469 aaKnown RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 PAWRQ96IZ0 340 aaKnown RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 ZFP91Q96JP5 570 aaPredicted RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 COL25A1Q9BXS0 654 aaPredicted RBP12.77□□□□□ -0.37
LIG1-211ENST00000596457 XPNPEP3Q9NQH7 507 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 OGDHLQ9ULD0 1010 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 TPCN1Q9ULQ1 816 aa12.77□□□□□ -0.37
LIG1-211ENST00000596457 PGK1P00558 417 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 EVCP57679 992 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 TNFAIP2Q03169 654 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 UBE2SQ16763 222 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 SEPT14Q6ZU15 432 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 ALDH8A1Q9H2A2 487 aaPredicted RBP12.76□□□□□ -0.37
LIG1-211ENST00000596457 PSTPIP2Q9H939 334 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 PXMP2Q9NR77 195 aa12.76□□□□□ -0.37
LIG1-211ENST00000596457 SMCO2A6NFE2 343 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 KBTBD13C9JR72 458 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 H0YGN5 161 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 STXBP3O00186 592 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 PRPF3O43395 683 aaKnown RBP12.75□□□□□ -0.37
LIG1-211ENST00000596457 SCG2P13521 617 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 PTGS1P23219 599 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 SCRN1Q12765 414 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 NID2Q14112 1375 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 STXBP2Q15833 593 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 TMEM63BQ5T3F8 832 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 TAPT1Q6NXT6 567 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 CPLX2Q6PUV4 134 aaKnown RBP12.75□□□□□ -0.37
LIG1-211ENST00000596457 SAMD3Q8N6K7 520 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 NECAB1Q8N987 351 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 ARRDC4Q8NCT1 418 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 MORC4Q8TE76 937 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 MAF1Q9H063 256 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 KATNBL1Q9H079 304 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 C11orf49Q9H6J7 331 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 VTA1Q9NP79 307 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 MAP3K20Q9NYL2 800 aaKnown RBP12.75□□□□□ -0.37
LIG1-211ENST00000596457 UNC80Q8N2C7 3258 aa12.75□□□□□ -0.37
LIG1-211ENST00000596457 KIAA1217Q5T5P2 1943 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 CENPFP49454 3210 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 RANBP2P49792 3224 aaKnown RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 DYNC1LI2O43237 492 aaPredicted RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 ADCY6O43306 1168 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 PFKFB2O60825 505 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 LARGE1O95461 756 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 NR3C2P08235 984 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 C6orf222P0C671 652 aaPredicted RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 IFNAR1P17181 557 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 SMPD1P17405 629 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 IRX5P78411 483 aaPredicted RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 PGM5Q15124 567 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 LRRC41Q15345 812 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 NTRK3Q16288 839 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 PFKFB3Q16875 520 aaPredicted RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 IQSEC1Q6DN90 963 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 TRIM22Q8IYM9 498 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 FERMT2Q96AC1 680 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 IL17RAQ96F46 866 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 IWS1Q96ST2 819 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 WDR11Q9BZH6 1224 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 SENP6Q9GZR1 1112 aaPredicted RBP12.74□□□□□ -0.37
LIG1-211ENST00000596457 AP5M1Q9H0R1 490 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 SPC25Q9HBM1 224 aa12.74□□□□□ -0.37
LIG1-211ENST00000596457 SYNRGQ9UMZ2 1314 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 MYH7BA7E2Y1 1941 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 LOC102724159A0A0B4J2E5 919 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 MEIS2O14770 477 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 EVI5O60447 810 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 DUSP11O75319 330 aaKnown RBP12.73□□□□□ -0.37
LIG1-211ENST00000596457 CCND2P30279 289 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 RBM25P49756 843 aaKnown RBP12.73□□□□□ -0.37
LIG1-211ENST00000596457 ADCY7P51828 1080 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 BEX3Q00994 111 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 PWP2Q15269 919 aaKnown RBP12.73□□□□□ -0.37
LIG1-211ENST00000596457 PKN1Q16512 942 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 ME3Q16798 604 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 RNF180Q86T96 592 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 IL31RAQ8NI17 732 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 COPS5Q92905 334 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 PGBD1Q96JS3 809 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 KIF2CQ99661 725 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 PDCD2LQ9BRP1 358 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 RNF26Q9BY78 433 aaPredicted RBP12.73□□□□□ -0.37
LIG1-211ENST00000596457 BARHL2Q9NY43 387 aa12.73□□□□□ -0.37
LIG1-211ENST00000596457 RTEL1Q9NZ71 1219 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms