RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 PLA2G4EQ3MJ16 856 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 CFAP100Q494V2 611 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 KIAA0319Q5VV43 1072 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 SHISA2Q6UWI4 295 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 DNAJC14Q6Y2X3 702 aaPredicted RBP9.98□□□□□ -0.81
SMAD4-209ENST00000589941 FBXO11Q86XK2 927 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 CACTIN-AS1Q8N1I8 211 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 BHLHE41Q9C0J9 482 aaPredicted RBP9.98□□□□□ -0.81
SMAD4-209ENST00000589941 SOX13Q9UN79 622 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 FAM205AQ6ZU69 1335 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 DOCK2Q92608 1830 aa9.98□□□□□ -0.81
SMAD4-209ENST00000589941 P4HBP07237 508 aaKnown RBP9.97□□□□□ -0.81
SMAD4-209ENST00000589941 U2AF1L5P0DN76 240 aaPredicted RBP9.97□□□□□ -0.81
SMAD4-209ENST00000589941 SELPP16109 830 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 U2AF1Q01081 240 aaKnown RBP eCLIP9.97□□□□□ -0.81
SMAD4-209ENST00000589941 KRT24Q2M2I5 525 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 TTLL5Q6EMB2 1281 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 DTWD1Q8N5C7 304 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 ASAP3Q8TDY4 903 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 PNISRQ8TF01 805 aaKnown RBP9.97□□□□□ -0.81
SMAD4-209ENST00000589941 LIN7BQ9HAP6 207 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 JAG2Q9Y219 1238 aa9.97□□□□□ -0.81
SMAD4-209ENST00000589941 GBF1Q92538 1859 aa9.96□□□□□ -0.81
SMAD4-209ENST00000589941 ANKRD33BA6NCL7 494 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 C1QTNF9BB2RNN3 333 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 TM4SF5O14894 197 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 CETPP11597 493 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 FOSL2P15408 326 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 GRIA4P48058 902 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 FLT3LGP49771 235 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 CCT4P50991 539 aaKnown RBP9.96□□□□□ -0.82
SMAD4-209ENST00000589941 MOGSQ13724 837 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 SPRED3Q2MJR0 410 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 CD163Q86VB7 1156 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 CCNJLQ8IV13 435 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 GALNT11Q8NCW6 608 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 TMEM39BQ9GZU3 492 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 COA1Q9GZY4 146 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.96□□□□□ -0.82
SMAD4-209ENST00000589941 MUC3BQ9H195 1237 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 SEMA6BQ9H3T3 888 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 ZCCHC17Q9NP64 241 aaKnown RBP9.96□□□□□ -0.82
SMAD4-209ENST00000589941 CHPF2Q9P2E5 772 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 MUC6Q6W4X9 2439 aa9.96□□□□□ -0.82
SMAD4-209ENST00000589941 RLFQ13129 1914 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 HGSNATQ68CP4 663 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 VN1R5Q7Z5H4 357 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 ANKRD18AQ8IVF6 992 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-209ENST00000589941 ZKSCAN4Q969J2 545 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-209ENST00000589941 EHD4Q9H223 541 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 DOCK1Q14185 1865 aa9.95□□□□□ -0.82
SMAD4-209ENST00000589941 LOC285556D6RIA3 1793 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 PDHXO00330 501 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 GADD45BO75293 160 aaPredicted RBP9.94□□□□□ -0.82
SMAD4-209ENST00000589941 CYP2C8P10632 490 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 HOXD10P28358 340 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 FCGRTP55899 365 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 SNAPC2Q13487 334 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 LRRC26Q2I0M4 334 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 PLBD2Q8NHP8 589 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 BSNDQ8WZ55 320 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 C11orf49Q9H6J7 331 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 TSPYL4Q9UJ04 414 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 MINPP1Q9UNW1 487 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 CSADQ9Y600 493 aa9.94□□□□□ -0.82
SMAD4-209ENST00000589941 TCP10L2B9ZVM9 353 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 H3BRJ5 948 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 SNAP23O00161 211 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 PPIL2Q13356 520 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 GRM2Q14416 872 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 CCDC27Q2M243 656 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.93□□□□□ -0.82
SMAD4-209ENST00000589941 CCDC152Q4G0S7 254 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 ANKRD23Q86SG2 305 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 ERO1BQ86YB8 467 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 GLIS3Q8NEA6 775 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 CHD7Q9P2D1 2997 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 ZNF70Q9UC06 446 aaPredicted RBP9.93□□□□□ -0.82
SMAD4-209ENST00000589941 MYH13Q9UKX3 1938 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 PLXNA1Q9UIW2 1896 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 ATAD5Q96QE3 1844 aa9.93□□□□□ -0.82
SMAD4-209ENST00000589941 A0A096LPE4 126 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 A0A1W2PPZ6 126 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 FSCN2O14926 492 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 MYO1BO43795 1136 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 WDHD1O75717 1129 aaPredicted RBP9.92□□□□□ -0.82
SMAD4-209ENST00000589941 MMP14P50281 582 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 C9orf50Q5SZB4 431 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 NPAS4Q8IUM7 802 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 ZBTB38Q8NAP3 1195 aaPredicted RBP9.92□□□□□ -0.82
SMAD4-209ENST00000589941 NECAB3Q96P71 396 aaPredicted RBP9.92□□□□□ -0.82
SMAD4-209ENST00000589941 WRNIP1Q96S55 665 aa9.92□□□□□ -0.82
SMAD4-209ENST00000589941 TDRD3Q9H7E2 651 aaKnown RBP9.92□□□□□ -0.82
SMAD4-209ENST00000589941 WDFY4Q6ZS81 3184 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 LRRC37A2A6NM11 1700 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 RBM5P52756 815 aaKnown RBP eCLIP9.91□□□□□ -0.82
SMAD4-209ENST00000589941 CACNB3P54284 484 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 FOXD4L6Q3SYB3 417 aaPredicted RBP9.91□□□□□ -0.82
SMAD4-209ENST00000589941 GPAT2Q6NUI2 795 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms