RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	TRMT13	Q9NUP7	481 aa	Known RBP	10.36	□□□□□ -0.75
NUP85-223	ENST00000583877	COG5	Q9UP83	839 aa		10.36	□□□□□ -0.75
NUP85-223	ENST00000583877	DDX49	Q9Y6V7	483 aa	Known RBP	10.36	□□□□□ -0.75
NUP85-223	ENST00000583877		M0R2C6	588 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	RFXAP	O00287	272 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	SLC3A2	P08195	630 aa	Known RBP	10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	CYP2C9	P11712	490 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	CPT1A	P50416	773 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	PURA	Q00577	322 aa	Known RBP	10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	TMEM63B	Q5T3F8	832 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	RCSD1	Q6JBY9	416 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	DEFB128	Q7Z7B8	93 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	DDX27	Q96GQ7	796 aa	Known RBP	10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	GPATCH3	Q96I76	525 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	WDR11	Q9BZH6	1224 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	ADD3	Q9UEY8	706 aa	Known RBP	10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	PRR12	Q9ULL5	1215 aa		10.35	□□□□□ -0.75
NUP85-223	ENST00000583877	RBM47	A0AV96	593 aa	Known RBP	10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	TLL1	O43897	1013 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	ICAM1	P05362	532 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	ALDH5A1	P51649	535 aa	Predicted RBP	10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	SNAP25	P60880	206 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	PPARA	Q07869	468 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	NSMF	Q6X4W1	530 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	KCTD1	Q719H9	257 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	MTG1	Q9BT17	334 aa	Predicted RBP	10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	LRFN3	Q9BTN0	628 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	CERS4	Q9HA82	394 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	CCPG1	Q9ULG6	757 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	STX8	Q9UNK0	236 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	HCN4	Q9Y3Q4	1203 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	ATG2A	Q2TAZ0	1938 aa		10.34	□□□□□ -0.75
NUP85-223	ENST00000583877	RAD50	Q92878	1312 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	MYO7A	Q13402	2215 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	EPOP	A6NHQ4	379 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	KIF28P	B7ZC32	967 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	MYL3	P08590	195 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	TAP1	Q03518	808 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	BAAT	Q14032	418 aa	Predicted RBP	10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	NBPF20	Q3BBV1	942 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	BRDT	Q58F21	947 aa	Predicted RBP	10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	NFRKB	Q6P4R8	1299 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	HERC6	Q8IVU3	1022 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	OR6J1	Q8NGC5	347 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	HLA-C	Q95604	372 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	CHMP4C	Q96CF2	233 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	PURB	Q96QR8	312 aa	Known RBP	10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	NAPB	Q9H115	298 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	RANBP17	Q9H2T7	1088 aa	Known RBP	10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	EPHX3	Q9H6B9	360 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	GPHN	Q9NQX3	736 aa	Predicted RBP	10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	IL17RB	Q9NRM6	502 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	RALGAPA2	Q2PPJ7	1873 aa		10.33	□□□□□ -0.76
NUP85-223	ENST00000583877	TSPY2	A6NKD2	308 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	NKRF	O15226	690 aa	Known RBP eCLIP	10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	KPNA6	O60684	536 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	BAIAP3	O94812	1187 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	IQCF3	P0C7M6	154 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	NOV	P48745	357 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	PTPN11	Q06124	597 aa	Predicted RBP	10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	BFSP2	Q13515	415 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	FAM47C	Q5HY64	1035 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	TMEM31	Q5JXX7	168 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	TSHZ3	Q63HK5	1081 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	KRT40	Q6A162	431 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	RETREG2	Q8NC44	543 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	DCAF4	Q8WV16	495 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	ARNTL2	Q8WYA1	636 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	SEC62	Q99442	399 aa	Known RBP	10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.32	□□□□□ -0.76
NUP85-223	ENST00000583877	LAMA4	Q16363	1823 aa		10.32	□□□□□ -0.76
NUP85-223	ENST00000583877		A6NJR5	290 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	NFIB	O00712	420 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	GALR2	O43603	387 aa	Predicted RBP	10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	NMT2	O60551	498 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	LPXN	O60711	386 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	ARHGEF15	O94989	841 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	GRB10	Q13322	594 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	PPP2R5B	Q15173	497 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	BTNL9	Q6UXG8	535 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	RASGRP2	Q7LDG7	609 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	MPHOSPH6	Q99547	160 aa	Known RBP	10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	DCTPP1	Q9H773	170 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	LMCD1	Q9NZU5	365 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	ZNF318	Q5VUA4	2279 aa		10.31	□□□□□ -0.76
NUP85-223	ENST00000583877	DOCK5	Q9H7D0	1870 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	PTPDC1	A2A3K4	754 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	GPR37L1	O60883	481 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	EDNRB	P24530	442 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	KCNJ6	P48051	423 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	CTDSPL2	Q05D32	466 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	PDE4D	Q08499	809 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	CCDC96	Q2M329	555 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	ZMYM1	Q5SVZ6	1142 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	SYDE2	Q5VT97	1194 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	RNF207	Q6ZRF8	634 aa		10.3	□□□□□ -0.76
NUP85-223	ENST00000583877	CCDC155	Q8N6L0	562 aa		10.3	□□□□□ -0.76

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