RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MMP19Q99542 508 aa12.23□□□□□ -0.45
SS18-213ENST00000579640 PORCNQ9H237 461 aa12.23□□□□□ -0.45
SS18-213ENST00000579640 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.23□□□□□ -0.45
SS18-213ENST00000579640 TFIP11Q9UBB9 837 aaKnown RBP12.23□□□□□ -0.45
SS18-213ENST00000579640 CNPY2Q9Y2B0 182 aa12.23□□□□□ -0.45
SS18-213ENST00000579640 TCHHQ07283 1943 aa12.23□□□□□ -0.45
SS18-213ENST00000579640 MYH7BA7E2Y1 1941 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 POTEB2H3BUK9 544 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 ATP2B1P20020 1258 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 STK38Q15208 465 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 SF3A1Q15459 793 aaKnown RBP12.22□□□□□ -0.45
SS18-213ENST00000579640 LETM2Q2VYF4 491 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 WDR78Q5VTH9 848 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 PPP4R3AQ6IN85 833 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 XRRA1Q6P2D8 792 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 SPATA32Q96LK8 384 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 RMDN3Q96TC7 470 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 EFCC1Q9HA90 598 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 COL20A1Q9P218 1284 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 ADD3Q9UEY8 706 aaKnown RBP12.22□□□□□ -0.45
SS18-213ENST00000579640 RCOR1Q9UKL0 485 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 PCDHB6Q9Y5E3 794 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 IVNS1ABPQ9Y6Y0 642 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 ELP1O95163 1332 aa12.22□□□□□ -0.45
SS18-213ENST00000579640 CYP3A7-CYP3A51PA0A087WV96 503 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 LOC102724159A0A0B4J2E5 919 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 B4DLN1 442 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 FIBPO43427 364 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 CCNT1O60563 726 aaKnown RBP12.21□□□□□ -0.45
SS18-213ENST00000579640 CYP3A7P24462 503 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 CIITAP33076 1130 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 HTRA3P83110 453 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 SLC39A14Q15043 492 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 PWP2Q15269 919 aaKnown RBP12.21□□□□□ -0.45
SS18-213ENST00000579640 ARHGEF16Q5VV41 709 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 PLEKHH3Q7Z736 793 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 JMYQ8N9B5 988 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 TMEM87AQ8NBN3 555 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 LINC00301Q8NCQ3 95 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 KCNG4Q8TDN1 519 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 NSUN6Q8TEA1 469 aaKnown RBP12.21□□□□□ -0.45
SS18-213ENST00000579640 TAAR1Q96RJ0 339 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 MPHOSPH6Q99547 160 aaKnown RBP12.21□□□□□ -0.45
SS18-213ENST00000579640 PXMP2Q9NR77 195 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 CLIC4Q9Y696 253 aa12.21□□□□□ -0.45
SS18-213ENST00000579640 LAD1O00515 517 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 PTMSP20962 102 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 CEBPZQ03701 1054 aaKnown RBP12.21□□□□□ -0.46
SS18-213ENST00000579640 PTPAQ15257 358 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 ZNF174Q15697 407 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 GPR142Q7Z601 462 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 FAM133AQ8N9E0 248 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 LEO1Q8WVC0 666 aaPredicted RBP12.21□□□□□ -0.46
SS18-213ENST00000579640 CHAMP1Q96JM3 812 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 MBOAT7Q96N66 472 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 IWS1Q96ST2 819 aa12.21□□□□□ -0.46
SS18-213ENST00000579640 FTOQ9C0B1 505 aaKnown RBP eCLIP12.21□□□□□ -0.46
SS18-213ENST00000579640 PLXNB2O15031 1838 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 ZNF236Q9UL36 1845 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 DNAJC25-GNG10A0A024R161 153 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 SLC15A5A6NIM6 579 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 DDX11L8A8MPP1 907 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 SPTLC2O15270 562 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 PPP6R2O75170 966 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 PTPREP23469 700 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 MCM7P33993 719 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 ZNF76P36508 570 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 NBR1Q14596 966 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 PGM5Q15124 567 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 PCNX4Q63HM2 1172 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 PDCD2LQ9BRP1 358 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 RNF186Q9NXI6 227 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 SAGE1Q9NXZ1 904 aa12.2□□□□□ -0.46
SS18-213ENST00000579640 LCTP09848 1927 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 WNT7AO00755 349 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 EDIL3O43854 480 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 NEMFO60524 1076 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 STAM2O75886 525 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 EIF2AK2P19525 551 aaKnown RBP12.19□□□□□ -0.46
SS18-213ENST00000579640 CCND2P30279 289 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 MCM4P33991 863 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 ATP2C1P98194 919 aaPredicted RBP12.19□□□□□ -0.46
SS18-213ENST00000579640 GRB14Q14449 540 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 Q4G0T1 1027 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 ARL6IP4Q66PJ3 421 aaKnown RBP12.19□□□□□ -0.46
SS18-213ENST00000579640 R3HDMLQ9H3Y0 253 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 SLC5A4Q9NY91 659 aa12.19□□□□□ -0.46
SS18-213ENST00000579640 DDX25Q9UHL0 483 aaKnown RBP12.19□□□□□ -0.46
SS18-213ENST00000579640 ZNFX1Q9P2E3 1918 aaKnown RBP12.19□□□□□ -0.46
SS18-213ENST00000579640 TDP2O95551 362 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 NR3C2P08235 984 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 ADORA2AP29274 412 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 PRPHP41219 470 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 ALDH5A1P51649 535 aaPredicted RBP12.18□□□□□ -0.46
SS18-213ENST00000579640 SETQ01105 290 aaPredicted RBP12.18□□□□□ -0.46
SS18-213ENST00000579640 PTGDRQ13258 359 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 CEP55Q53EZ4 464 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 NIPA1Q7RTP0 329 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 VSIG10LQ86VR7 867 aa12.18□□□□□ -0.46
SS18-213ENST00000579640 FERMT2Q96AC1 680 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms