RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 ALDH8A1Q9H2A2 487 aaPredicted RBP22.31■■□□□ 1.16
SS18-208ENST00000577751 PXMP2Q9NR77 195 aa22.31■■□□□ 1.16
SS18-208ENST00000577751 GNEQ9Y223 722 aaKnown RBP22.31■■□□□ 1.16
SS18-208ENST00000577751 HOXA13P31271 388 aaPredicted RBP22.3■■□□□ 1.16
SS18-208ENST00000577751 GJA9P57773 515 aa22.3■■□□□ 1.16
SS18-208ENST00000577751 RNF180Q86T96 592 aa22.3■■□□□ 1.16
SS18-208ENST00000577751 ZNF274Q96GC6 653 aaPredicted RBP22.3■■□□□ 1.16
SS18-208ENST00000577751 UPF3AQ9H1J1 476 aaKnown RBP22.3■■□□□ 1.16
SS18-208ENST00000577751 V9GY48 417 aaPredicted RBP22.3■■□□□ 1.16
SS18-208ENST00000577751 KBTBD13C9JR72 458 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 PIK3CDO00329 1044 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 SMPD1P17405 629 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 NTRK3Q16288 839 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 ARHGEF16Q5VV41 709 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 CCSAPQ6IQ19 270 aaPredicted RBP22.29■■□□□ 1.16
SS18-208ENST00000577751 PDCD2LQ9BRP1 358 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 Q9Y3F1 56 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 KIAA1217Q5T5P2 1943 aa22.29■■□□□ 1.16
SS18-208ENST00000577751 MEIS2O14770 477 aa22.28■■□□□ 1.16
SS18-208ENST00000577751 CTAGE5O15320 804 aa22.28■■□□□ 1.16
SS18-208ENST00000577751 NR3C2P08235 984 aa22.28■■□□□ 1.16
SS18-208ENST00000577751 EIF2AK2P19525 551 aaKnown RBP22.28■■□□□ 1.16
SS18-208ENST00000577751 CST5P28325 142 aaPredicted RBP22.28■■□□□ 1.16
SS18-208ENST00000577751 TMEM63BQ5T3F8 832 aa22.28■■□□□ 1.16
SS18-208ENST00000577751 TSEN34Q9BSV6 310 aaKnown RBP22.28■■□□□ 1.16
SS18-208ENST00000577751 SENP6Q9GZR1 1112 aaPredicted RBP22.28■■□□□ 1.16
SS18-208ENST00000577751 PHF24Q9UPV7 400 aa22.28■■□□□ 1.16
SS18-208ENST00000577751 STXBP2Q15833 593 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 DUSP28Q4G0W2 176 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 WWC2Q6AWC2 1192 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 HEATR3Q7Z4Q2 680 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 DPF3Q92784 378 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 GPKOWQ92917 476 aaPredicted RBP eCLIP22.27■■□□□ 1.16
SS18-208ENST00000577751 LARP6Q9BRS8 491 aaKnown RBP22.27■■□□□ 1.16
SS18-208ENST00000577751 WDR11Q9BZH6 1224 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 PSTPIP2Q9H939 334 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 FRMPD4Q14CM0 1322 aa22.27■■□□□ 1.16
SS18-208ENST00000577751 MYADML2A6NDP7 307 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 hCG_1984214I3L0E3 225 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 PRPF3O43395 683 aaKnown RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 EIF3JO75822 258 aaKnown RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 MYCNP04198 464 aaPredicted RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 CCT2P78371 535 aaKnown RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 IRX5P78411 483 aaPredicted RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 PGM5Q15124 567 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 TYW1BQ6NUM6 668 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 USP17L6PQ6QN14 398 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 VSIG10LQ86VR7 867 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 FCHSD1Q86WN1 690 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 ZNF713Q8N859 430 aaPredicted RBP22.26■■□□□ 1.15
SS18-208ENST00000577751 SCFD2Q8WU76 684 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 SPC25Q9HBM1 224 aa22.26■■□□□ 1.15
SS18-208ENST00000577751 C6orf222P0C671 652 aaPredicted RBP22.25■■□□□ 1.15
SS18-208ENST00000577751 IFNAR1P17181 557 aa22.25■■□□□ 1.15
SS18-208ENST00000577751 PTGS1P23219 599 aa22.25■■□□□ 1.15
SS18-208ENST00000577751 PFKFB3Q16875 520 aaPredicted RBP22.25■■□□□ 1.15
SS18-208ENST00000577751 NOL8Q76FK4 1167 aaKnown RBP22.25■■□□□ 1.15
SS18-208ENST00000577751 TLK2Q86UE8 772 aa22.25■■□□□ 1.15
SS18-208ENST00000577751 CUL5Q93034 780 aa22.25■■□□□ 1.15
SS18-208ENST00000577751 NCOA5Q9HCD5 579 aaKnown RBP22.25■■□□□ 1.15
SS18-208ENST00000577751 BARHL2Q9NY43 387 aa22.25■■□□□ 1.15
SS18-208ENST00000577751 MOXD2PA6NHM9 499 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 STXBP3O00186 592 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 DYNC1LI2O43237 492 aaPredicted RBP22.24■■□□□ 1.15
SS18-208ENST00000577751 KCNA10Q16322 511 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 PKN1Q16512 942 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 LRRC26Q2I0M4 334 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 PPP1R18Q6NYC8 613 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 CCDC62Q6P9F0 684 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 TEX2Q8IWB9 1127 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 PCSK9Q8NBP7 692 aaKnown RBP22.24■■□□□ 1.15
SS18-208ENST00000577751 IL31RAQ8NI17 732 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 SMARCC2Q8TAQ2 1214 aa22.24■■□□□ 1.15
SS18-208ENST00000577751 RNF26Q9BY78 433 aaPredicted RBP22.24■■□□□ 1.15
SS18-208ENST00000577751 RBM27Q9P2N5 1060 aaKnown RBP22.24■■□□□ 1.15
SS18-208ENST00000577751 NKRFO15226 690 aaKnown RBP eCLIP22.23■■□□□ 1.15
SS18-208ENST00000577751 EVI5O60447 810 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 ARIH2O95376 493 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 SCG2P13521 617 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 ACLYP53396 1101 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 AK2P54819 239 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 TTLL4Q14679 1199 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 ANKRD1Q15327 319 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 GNASQ5JWF2 1037 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 PRPF38BQ5VTL8 546 aaKnown RBP22.23■■□□□ 1.15
SS18-208ENST00000577751 SLC39A5Q6ZMH5 540 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 PHKBQ93100 1093 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 AP5M1Q9H0R1 490 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 TPCN1Q9ULQ1 816 aa22.23■■□□□ 1.15
SS18-208ENST00000577751 RGS20O76081 388 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 ASGR1P07306 291 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 NAPAP54920 295 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 SNX17Q15036 470 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 C1orf53Q5VUE5 145 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 FERMT2Q96AC1 680 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 GTF3C3Q9Y5Q9 886 aa22.22■■□□□ 1.15
SS18-208ENST00000577751 A0A1W2PQ45 241 aaPredicted RBP22.21■■□□□ 1.15
SS18-208ENST00000577751 A0A1W2PQY0 241 aa22.21■■□□□ 1.15
SS18-208ENST00000577751 TXNP10599 105 aaKnown RBP22.21■■□□□ 1.15
SS18-208ENST00000577751 MYCLP12524 364 aaPredicted RBP22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms