RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PTPDC1A2A3K4 754 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 ZBTB43O43298 467 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 ORC4O43929 436 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 ELP1O95163 1332 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 FGBP02675 491 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 METAP2P50579 478 aaKnown RBP eCLIP11.73□□□□□ -0.53
SS18-207ENST00000577636 CCL23P55773 120 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 CCT2P78371 535 aaKnown RBP11.73□□□□□ -0.53
SS18-207ENST00000577636 BEX3Q00994 111 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 PKP1Q13835 747 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 FOXD4L5Q5VV16 416 aaPredicted RBP11.73□□□□□ -0.53
SS18-207ENST00000577636 PSRC1Q6PGN9 363 aaPredicted RBP11.73□□□□□ -0.53
SS18-207ENST00000577636 OTOP2Q7RTS6 562 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 SGMS1Q86VZ5 419 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 MSL3Q8N5Y2 521 aaKnown RBP11.73□□□□□ -0.53
SS18-207ENST00000577636 NAV1Q8NEY1 1877 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 FOXD4L4Q8WXT5 416 aaPredicted RBP11.73□□□□□ -0.53
SS18-207ENST00000577636 SYNGAP1Q96PV0 1343 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 SLC28A3Q9HAS3 691 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 ZSWIM5Q9P217 1185 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 CLIP2Q9UDT6 1046 aa11.73□□□□□ -0.53
SS18-207ENST00000577636 GOLGA8AA7E2F4 631 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 F5H6K3 240 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 ADCY6O43306 1168 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 NDUFB10O96000 172 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 RABGGTBP53611 331 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 RCAN1P53805 252 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 GJA9P57773 515 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 KLRC3Q07444 240 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 COL9A3Q14050 684 aaPredicted RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 PPP2R5BQ15173 497 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 SKIV2LQ15477 1246 aaKnown RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 RAB30Q15771 203 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 MAMDC4Q6UXC1 1216 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 FAM126BQ8IXS8 530 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 PRPF38AQ8NAV1 312 aaKnown RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 IGDCC4Q8TDY8 1250 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 ZSCAN10Q96SZ4 725 aaPredicted RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 MTIF3Q9H2K0 278 aaKnown RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 ABHD16BQ9H3Z7 469 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 IL23AQ9NPF7 189 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 HOMER2Q9NSB8 354 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 CXXC1Q9P0U4 656 aaPredicted RBP11.72□□□□□ -0.53
SS18-207ENST00000577636 BRPF3Q9ULD4 1205 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
SS18-207ENST00000577636 DNAJC25-GNG10A0A024R161 153 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.71□□□□□ -0.53
SS18-207ENST00000577636 TSPY2A6NKD2 308 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 ZBBXA8MT70 800 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 F13A1P00488 732 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 FGRP09769 529 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 CALM1P0DP23 149 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 CALM2P0DP24 149 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 CALM3P0DP25 149 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 ST3GAL1Q11201 340 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 APOA5Q6Q788 366 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 CXCL17Q6UXB2 119 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 ARMCX2Q7L311 632 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 CATIPQ7Z7H3 387 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 ZNF444Q8N0Y2 327 aaPredicted RBP11.71□□□□□ -0.53
SS18-207ENST00000577636 SMARCC2Q8TAQ2 1214 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 HERVK_113Q902F9 699 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 WASF1Q92558 559 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 NECAB3Q96P71 396 aaPredicted RBP11.71□□□□□ -0.53
SS18-207ENST00000577636 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.71□□□□□ -0.53
SS18-207ENST00000577636 TSPYL2Q9H2G4 693 aaPredicted RBP11.71□□□□□ -0.53
SS18-207ENST00000577636 HIPK3Q9H422 1215 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 LY9Q9HBG7 655 aa11.71□□□□□ -0.53
SS18-207ENST00000577636 YBX2Q9Y2T7 364 aaKnown RBP11.71□□□□□ -0.53
SS18-207ENST00000577636 LAMA4Q16363 1823 aa11.71□□□□□ -0.54
SS18-207ENST00000577636 A0A0G2JMZ2 1700 aa11.71□□□□□ -0.54
SS18-207ENST00000577636 ROBO3Q96MS0 1386 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 TNKSO95271 1327 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 UMODL1Q5DID0 1318 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 DYNC1LI2O43237 492 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 TRAK2O60296 914 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 JAK2O60674 1132 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 MYOGP15173 224 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 PTGS1P23219 599 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 CST5P28325 142 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 CNTN2Q02246 1040 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 TNFAIP2Q03169 654 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 IFIT1BQ5T764 474 aaKnown RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 RASIP1Q5U651 963 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 ZNF467Q7Z7K2 595 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 MICU3Q86XE3 530 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 TRIM22Q8IYM9 498 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 NSUN7Q8NE18 718 aaKnown RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 FAM122AQ96E09 287 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 ZSCAN16Q9H4T2 348 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 NCOA5Q9HCD5 579 aaKnown RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 INCENPQ9NQS7 918 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 GPHNQ9NQX3 736 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 MTMR6Q9Y217 621 aa11.7□□□□□ -0.54
SS18-207ENST00000577636 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.7□□□□□ -0.54
SS18-207ENST00000577636 COL11A1P12107 1806 aaPredicted RBP11.7□□□□□ -0.54
SS18-207ENST00000577636 MYO9BQ13459 2157 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 PRDM1O75626 825 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 CD4P01730 458 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms