RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 ANKRD2Q9GZV1 360 aa19■□□□□ 0.63
VPS53-215ENST00000573028 SNX12Q9UMY4 172 aa19■□□□□ 0.63
VPS53-215ENST00000573028 LRRC53A6NM62 1247 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 GLIS3Q8NEA6 775 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 TRIM58Q8NG06 486 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 VIPAS39Q9H9C1 493 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 GOLGA6CA6NDK9 693 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 POTEMA6NI47 508 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 LAD1O00515 517 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 GOLGA6DP0CG33 693 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 MAGEA1P43355 309 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 VWA3BQ502W6 1294 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 TMC4Q7Z404 712 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 EYA3Q99504 573 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 KANSL2Q9H9L4 492 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 GOLGA6AQ9NYA3 693 aa18.99■□□□□ 0.63
VPS53-215ENST00000573028 FRMPD2Q68DX3 1309 aaPredicted RBP18.99■□□□□ 0.63
VPS53-215ENST00000573028 TARSL2A2RTX5 802 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 PALM3A6NDB9 673 aaPredicted RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 MYMKA6NI61 221 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 PRPF6O94906 941 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 EIF6P56537 245 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 RASSF7Q02833 373 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 ARID5AQ03989 594 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 CREG2Q8IUH2 290 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 C7orf25Q9BPX7 421 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 MMTAG2Q9BU76 263 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 JRKLQ9Y4A0 524 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 DOT1LQ8TEK3 1739 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 ANO9A1A5B4 782 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 BAG3O95817 575 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 RASA1P20936 1047 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 PRPHP41219 470 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 FAM76AQ8TAV0 307 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 GJA10Q969M2 543 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 AK8Q96MA6 479 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 ERGIC2Q96RQ1 377 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 EHD4Q9H223 541 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 TBC1D7Q9P0N9 293 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 A0A1B0GUL6 1792 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 GNA11P29992 359 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 AARSP49588 968 aaKnown RBP eCLIP18.98■□□□□ 0.63
VPS53-215ENST00000573028 RNASE9P60153 205 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 GFPT1Q06210 699 aaPredicted RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 GALNT17Q6IS24 598 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 REXO1Q8N1G1 1221 aaKnown RBP18.98■□□□□ 0.63
VPS53-215ENST00000573028 SPATA4Q8NEY3 305 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 COA7Q96BR5 231 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 TSGA10Q9BZW7 698 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 ZMYND12Q9H0C1 365 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 CUEDC2Q9H467 287 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 POLD4Q9HCU8 107 aa18.98■□□□□ 0.63
VPS53-215ENST00000573028 TMED8Q6PL24 325 aaPredicted RBP18.97■□□□□ 0.63
VPS53-215ENST00000573028 SH2D4AQ9H788 454 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 PLAGL2Q9UPG8 496 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 AGPSO00116 658 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 MARCH6O60337 910 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 CALCRLQ16602 461 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 DAGLBQ8NCG7 672 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 OSBPL9Q96SU4 736 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 MKRN1Q9UHC7 482 aaKnown RBP18.97■□□□□ 0.63
VPS53-215ENST00000573028 MYH10P35580 1976 aa18.97■□□□□ 0.63
VPS53-215ENST00000573028 TDP2O95551 362 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 MS4A14Q96JA4 679 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 ALS2CR12Q96Q35 445 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 SALL4Q9UJQ4 1053 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 FAM184BQ9ULE4 1060 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 TNNI2P48788 182 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 NUDT12Q9BQG2 462 aa18.96■□□□□ 0.63
VPS53-215ENST00000573028 ZC3H4Q9UPT8 1303 aaKnown RBP18.96■□□□□ 0.63
VPS53-215ENST00000573028 USP17L5A8MUK1 530 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 PAFAH1B1P43034 410 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 CDK8P49336 464 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 PPARDQ03181 441 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 GRB10Q13322 594 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 PTF1AQ7RTS3 328 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 FNBP4Q8N3X1 1017 aaPredicted RBP18.95■□□□□ 0.62
VPS53-215ENST00000573028 SNX29Q8TEQ0 813 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 LARP4BQ92615 738 aaKnown RBP18.95■□□□□ 0.62
VPS53-215ENST00000573028 RUFY1Q96T51 708 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 PHLPP1O60346 1717 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 SLC37A4O43826 429 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 ZSCAN29Q8IWY8 852 aaPredicted RBP18.95■□□□□ 0.62
VPS53-215ENST00000573028 CEP95Q96GE4 821 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 PURBQ96QR8 312 aaKnown RBP18.95■□□□□ 0.62
VPS53-215ENST00000573028 MAGEF1Q9HAY2 307 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 BLOC1S4Q9NUP1 217 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 SLC1A4P43007 532 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 APBA1Q02410 837 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 NFIXQ14938 502 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 MAN2A1Q16706 1144 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 CENPPQ6IPU0 288 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 TPTE2Q6XPS3 522 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 CLEC10AQ8IUN9 316 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 SIK3Q9Y2K2 1263 aa18.95■□□□□ 0.62
VPS53-215ENST00000573028 ESYT3A0FGR9 886 aa18.94■□□□□ 0.62
VPS53-215ENST00000573028 GNPATO15228 680 aa18.94■□□□□ 0.62
VPS53-215ENST00000573028 CCT5P48643 541 aa18.94■□□□□ 0.62
VPS53-215ENST00000573028 CCDC40Q4G0X9 1142 aa18.94■□□□□ 0.62
VPS53-215ENST00000573028 TEX11Q8IYF3 940 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms